BAC Information

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BAC

Clone NameMSMg01-399M21
Chromosome13 (Build37)
Map Location 23,552,310 - 23,552,430
singlet/doubletsinglet
Overlap geneBtn1a1
Upstream geneLOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1
Downstream geneBtn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399M21.T7 (MSMg01no399_m21.b1)MSMg01-399M21.TJ (MSMg01no399_m21.g1)
ACCAG499579AG499580
length799743
length of high quality
(start - end)
183 (76 - 258)125 (96 - 220)
definitionCHROMAT_FILE: MSMg01no399_m21.b1 PHD_FILE: MSMg01no399_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:55 2005CHROMAT_FILE: MSMg01no399_m21.g1 PHD_FILE: MSMg01no399_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGAGGATCCGC
GGAATTCTTCCCATTTCCATCTTCAATATGAATTTTTTCTTTGAGGGCTA
CCTTCCCTAGGTTTTGTCATTAAGGTTATGACAGCTTCATGGTCTTGTTT
ATCTATTGCTATATGAAGAAAGAAGGAAAGGAAGAGAAAGAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGA
GAGAGAGAGACAGAGAGAGAGGTAGGGAGGCATCCCTTTTCCTCCCTCCC
TCTTTCCCCCCCCTCCTCCTCTTTTTTTTTTTTTTTCCCCCTCTTTCCTT
CTCCCCCTTTCCCCCCCCCTCCTTTCCCCTCTCCCCCTCTTTTTTTTTTC
TTTTTCCTTCTTCCTTTCTTTTTTATTTTTTCCCCCCCCCCTTCTCCTCC
TCTTTCCCCCTTTTTCTCTTTCCATCCCCATTTTTTCCTTTCCATTTTCT
CCCCCCCCTTCCTTTTCCCTTCTTTTTCCCCTCTTCTTTTTCCCCCCCCT
TTTTCCCTCCCCCCTCTAATTTATCCCCCTTCCTTTTTTACCCCTTTCCT
TTTCCTTTCCCCTCTTCCTTTATATTTCCTTCTTTTCCCCCCCTTCTTTT
CTCCTTTTTTTCCCCCCCTCTCTCCCTTTATCACCTTCCCTTTTTCTTTT
CCCCTTTCCTCTCCTTCTCCCCCTTTTCTCTCCCCTTTTTCCCTTTTTCC
CCCTCTTTTTTTCCCTCCCCCCCCCACTAATTCCCCTACTTTCTCTTTN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAACCTTCCCTGGAAGTCGAGATATAAAGCC
CTTGGGGACAGTGACTTACCTTTAGAGCCAAATTCCTTCTTCCGCAGACT
GGATCTTTTCTTGTATAGTTTCCAAGTGAAAAATATGGACCCAATGGTGA
GAAATCCTAAGGCCAGCAAGACGATAGCCACAGCTACTATCCAGGGTAGT
CAGCCTTGGCACGAAGGGAGCTAAAACACCAAACACAACCAAAATGAACA
ATCAACAAACCGATACAGGACATTGTTTGCTATTATGAACAACTTCAGCT
TCTCTTCTGATATTTTTGCATATCAGACCCGTCATTGCTCTCGGTGGCCT
CCCACTGTCTATTTTAACAACTTGCTCTCTCCTTCCCAACTTTTTCTTAA
CGATTCGACCCTGTGCCAAAGCATGCATTGAACTGCCAGTTGCGCTCACA
ATTTGTGACTTAATCATTTCCAGTAACCCCTTGCTAACTATCACCGCACC
ACCTTTACTTCTGCCCACGAACACTCATTGTTGTCTGCCCTGCTTCATTT
TTTTGTACCCCATCTGAATATTTATATTTAGGCATGTTTTCCTGTTTTCT
CCTCCCGTGTTATACCCCCCTTAACTTTACTTTTTGTTTCTCCGTTACCA
ACCCCCCCTCTTTCTCCCCGTTTATTCCCTCTCTCGACTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_m21.g1 MSMg01no399_m21.g1 CHROMAT_FILE:
MSMg01no399_m21.g1 PHD_FILE: MSMg01no399_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:55 2005
         (125 letters)



>mm_chr13_23552110_23552634
          Length = 525

 Score =  226 bits (117), Expect = 3e-64
 Identities = 120/121 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcccttggggacagtgacttacctttagagccaaattccttcttccgcagactggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcccttggggacagtgacttacctttagagccaaattccttcttccgcagactggatc 260

                                                                       
Query: 61  ttttcttgtatagtttccaagtgaaaaatatggacccaatggtgagaaatcctaaggcca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccttgtatagtttccaagtgaaaaatatggacccaatggtgagaaatcctaaggcca 320

            
Query: 121 g 121
           |
Sbjct: 321 g 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 525
Length adjustment: 8
Effective length of query: 117
Effective length of database: 517
Effective search space:    60489
Effective search space used:    60489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)