Query= MSMg01no400_k20.b1 MSMg01no400_k20.b1 CHROMAT_FILE:
MSMg01no400_k20.b1 PHD_FILE: MSMg01no400_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:04 2005
(379 letters)
>mm_chr13_69325174_69325952
Length = 779
Score = 702 bits (363), Expect = 0.0
Identities = 375/383 (97%), Gaps = 8/383 (2%)
Strand = Plus / Plus
Query: 1 aacaaaaataacagttgtataatactgcaatttttttttgaattatgggtttgtgcatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaaaataacagttgtataatactgcaatttttttttgaattatgggtttgtgcatat 260
Query: 61 tctttattcctgaagtccacgaggtgggagctcccccactgccctctttgttacatctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttattcctgaagtccacgaggtgggagctcccccactgccctctttgttacatctcc 320
Query: 121 tctgtttactcttctgtgtattagaatggtcattttattagtgagcagataactgagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtttactcttctgtgtattagaatggtcattttattagtgagcagataactgagtgt 380
Query: 181 atcttttatgaatatggatccttactgatttagagtaaattgataacagttatttatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttttatgaatatggatccttactgatttagagtaaattgataacagttatttatcaa 440
Query: 241 taaactgaagatttta----ttccatcaatatgtactaaatatgacttgattatttcatt 296
||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaactgaaga----aaggattccatcaatatgtactaaatatgacttgattatttcatt 496
Query: 297 gttttaatgaatcttataattaaggagaattgaggaaagaaattttttttgaaaaaatta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gttttaatgaatcttataattaaggagaattgaggaaagaaattttttttgaaaaaatta 556
Query: 357 taaaggtcttcagcctgaaagat 379
|||||||||||||||||||||||
Sbjct: 557 taaaggtcttcagcctgaaagat 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_k20.g1 MSMg01no400_k20.g1 CHROMAT_FILE:
MSMg01no400_k20.g1 PHD_FILE: MSMg01no400_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:04 2005
(416 letters)
>mm_chr13_69504779_69505594
Length = 816
Score = 797 bits (412), Expect = 0.0
Identities = 415/416 (99%)
Strand = Plus / Minus
Query: 1 tccagacagtgtgtttcagataattaatgtcttataaaactggtcccttgaggagggctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tccagacagtgtgtttcagataattaatgtcttataaaactggtcccttgaggagggctc 557
Query: 61 agactggagccattgtccttgtgaagatatttcatcatgaaaattggtcattgagagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agactggagccattgtccttgtgaagatatttcatcatgaaaattggtcattgagagaaa 497
Query: 121 attgctacagcttcacatgtctagtgcagccttccctactctagttagttcatttgaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 attgctacagcttcacatgtctagtgcagccttccctactctagttagttcatttgaatg 437
Query: 181 cccaagggacaccagaccacatggatggatttttactgaggccttcctgacaggctgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cccaagggacaccagaccacatggatggatttttactgaggccttcctgacaggctgtct 377
Query: 241 ttcaggacccatgaaggcccatgctcacagtcacaatggtcccactgggcccaggtcacc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttcaggacccaggaaggcccatgctcacagtcacaatggtcccactgggcccaggtcacc 317
Query: 301 agacagtgaactttgtcatctgttaccaccagcatctgctaaggagaagtccaaattcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agacagtgaactttgtcatctgttaccaccagcatctgctaaggagaagtccaaattcag 257
Query: 361 ttgctaaattaagttgcattttcacaaaacaattcatatttatctaaacagcacag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgctaaattaagttgcattttcacaaaacaattcatatttatctaaacagcacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
