BAC Information

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BAC

Clone NameMSMg01-400M21
Chromosome13 (Build37)
Map Location 38,051,306 - 38,051,740
singlet/doubletsinglet
Overlap genenone
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1
Downstream geneSsr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400M21.T7 (MSMg01no400_m21.b1)MSMg01-400M21.TJ (MSMg01no400_m21.g1)
ACCAG500339AG500340
length769774
length of high quality
(start - end)		456 (78 - 533)436 (80 - 515)
definitionCHROMAT_FILE: MSMg01no400_m21.b1 PHD_FILE: MSMg01no400_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:14 2005CHROMAT_FILE: MSMg01no400_m21.g1 PHD_FILE: MSMg01no400_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTATTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCCAAACACATTCCACTCTTCAGCCGGCAGAATCACGCCCC
TGCCAGAGCACAAGACAAATCATAGTCAGCTGCTGTGGACAATCTGAAGT
AGTGCCATATCCCACACCTAGGACTGAAACAAAAGCACACTCATGTAACA
TAATGGGGCTTTTAAAGAAACCAAAACTCTCATTACATGTGTGTCTTTGG
AGAACGCTGCTCCAGGAGAAACAAGCAAAACATGACTCAAACAATACTAA
GAAAACAATACATTAAGAAAACGAGAAAACCATTGATGGAGAGATGGCTC
AGCAGTTAAGAGTATGTACTGCTCTTGGAGATGACCCCAGTTCAGGTCTC
AGCACCCATGTCAGATAGCCCACAACCAATGACCCTGTAACTCCAGCTCC
AGGGGACTGACACTGGACATGCTGGTCTCCACACACACCTGTACCCATAC
CCCTCCACATGTACATAATGAAAATTAACATCAACACCGAGAAACTAAGA
GAATGTGTTCATTTCAAAGATGATAACCAGCAGCCAATGATGCTGAGAAT
TCGTAAATATGACTTGCCCTTTAAATATAGCAACAAAAAAATTGGCCAAA
AACTTGGGAAAAATATTTATTTCTGTGGAGGCCCCCTGGGATCTGAACAA
GCCTCTTTTAAAATTTTCAAAAAAAATTTGTAAGAAAATTTTCCCCTTTT
TGAAAGAAAATACTTATTT

TTTTGGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACGTAGACCAGGCTGGTC
CTGAACTCACAGAGAGCTGCTACCTCTCTCTGCCTAGCCAGTAGTACAAT
TAGAGCCACGGAAGCAATATCCGGGGCTGCATTCAGTTTTCATTGCTTGT
TTTATCCCCCTTCCCATTTCCCTGACGCCCCTAACTTTTTCATGCATAGT
AGGACTACCATTTATGTGAGAGAGTTTTGTGGTGTCTTTGTGGGAAGGCA
GGGCTAATGAGCAGCTATACATTCCCCACCCCACTCATCTGAGAGCCTGG
GGTCCAGCCGTCACCATGTTGTCAATTCCTGTGAGAGGCAGGCAGGACTC
AGGACAGCCCACAGTCAAAGCCAGGCAGGTCACTTCCCTATTTGGCTCCA
GCTTCCTTCCCCTGAAAGAAGCGACTGCTGTGTTCCTTATTTAGGACACT
GACTTTGGCAGCTTCGGCTTGGAGAGCACTGGTTTGTTGTTGTTAACGAG
CAACCTTTAATGATAGGGTTTAAAAAAACACCAGTGGGTTTCCCTGGGTT
AACCCTCCCTCTCCCCGTCTCCCTTTGGGAAATGGCAGTCATTCCTCTTG
CCTCGGGTAAATGGCTTCGATCCTTTAAATGTTTGGGTTTTATAAATTCC
CTCCCCTTCTGTCTTTGTCTTTTTTTCTCTTCTTTATTGTGCCATGTTTT
CTATTCCTTGAACTTCTTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_m21.g1 MSMg01no400_m21.g1 CHROMAT_FILE:
MSMg01no400_m21.g1 PHD_FILE: MSMg01no400_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:14 2005
         (436 letters)



>mm_chr13_38051030_38051865
          Length = 836

 Score =  818 bits (423), Expect = 0.0
 Identities = 432/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacgtagaccaggctggtcctgaactcacagagagctgctacctctctctgcctagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctacgtagaccaggctggtcctgaactcacagagagctgctacctctctctgcctagcc 652

                                                                       
Query: 61  agtagtacaattagagccacggaagcaatatccggggctgcattcagttttcattgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agtagtacaattagagccacggaagcaatatccggggctgcattcagttttcattgcttg 592

                                                                       
Query: 121 ttttatcccccttcccatttccctgacgcccctaactttttcatgcatagtaggactacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttttatcccccttcccatttccctgacgcccctaactttttcatgcatagtaggactacc 532

                                                                       
Query: 181 atttatgtgagagagttttgtggtgtctttgtgggaaggcagggctaatgagcagctata 240
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 531 atttatgtgagagagttgtgtggtgtctttgtgggaaggcggggctaatgagcagctata 472

                                                                       
Query: 241 cattccccaccccactcatctgagagcctggggtccagccgtcaccatgttgtcaattcc 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 471 cattccccaccccactcatctgagagcctggggtccagccctcaccatgttgtcaattcc 412

                                                                       
Query: 301 tgtgagaggcaggcaggactcaggacagcccacagtcaaagccaggcaggtcacttccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgtgagaggcaggcaggactcaggacagcccacagtcaaagccaggcaggtcacttccct 352

                                                                       
Query: 361 atttggctccagcttccttcccctgaaagaagcgactgctgtgttccttatttaggacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atttggctccagcttccttcccctgaaagaagcgactgctgtgttccttatttaggacac 292

                          
Query: 421 tgactttggcagctt 435
           |||||||||||||||
Sbjct: 291 tgactttggcagctt 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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