BAC Information

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BAC

Clone NameMSMg01-401B01
Chromosome13 (Build37)
Map Location 96,227,225 - 96,227,611
singlet/doubletsinglet
Overlap genenone
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp
Downstream geneS100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401B01.T7 (MSMg01no401_b01.b1)MSMg01-401B01.TJ (MSMg01no401_b01.g1)
ACCAG500538AG500539
length605724
length of high quality
(start - end)
463 (82 - 544)472 (89 - 560)
definitionCHROMAT_FILE: MSMg01no401_b01.b1 PHD_FILE: MSMg01no401_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:36 2005CHROMAT_FILE: MSMg01no401_b01.g1 PHD_FILE: MSMg01no401_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCCAAATTGCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAAGGTTCCTACCTAAACATAGTAAAAGCAA
TATACAGCAAACCAGTAGCCAACATCAAACTAAATGGAGAGAAACTTAAA
GCAATCCCACTAAAATCAGGGCCTAGACAAAACTGCCCATTCTCTCCCTA
CCTATTCAATATAGTACTTGAAATCCTAGCCAAGGCAATTAGACAAAAAG
AGATCAAAAGGATACAAATTGGAAAGGAAGAAGTCAGAATATCACTATTT
GCAGATGATATGATAGTATACTTAAGTGACCCCAAAAATTCCACCAAAGA
ACTCCTAAACCTGATAAACAACTTCATCAAAGTGGCTGGATATGAAATTA
ACTCAAACAAATCAGCAGACTTCCTCTACTCAAAGGATAAACAGGCTGAG
AAAGAAATCAGGGAAACAACACCCTTCACAACAATCACAAATAATATAAA
ATACCTTGGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATTAAG
AACTTCAAGTCTTCTGAAGAATAGAAATTAAAGGATCTTCAGGAAGAAGG
GAAAT
TTTTCCTTTTCCGATTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTGATGGA
CTACAGTGTGGAGGTGAAAGCTGAATACCAACCCCACCACCCCCACCACC
CCCACACACCAACTTACATGGTTTTGTCCCAGCGACAGTAATCCTAACCA
GAACAGGAGAAAATGAAGCCATTGTAACCAACTAAAAGTTTTTCCAAAGA
TCTCACTAAAGTAAAATATAATATGTACTATGGTTTGAATGATGATGTCT
TCAAGATTTGTTTAGAAACTTCATCCCAATGCAAGAATATGAGGAGACAG
GGTCTCAGAAGTGATTGAGTCATAAGAGCTTTATCTCCAGGAAGAGGACC
AATGCCTTCCCAAGGGCCATTCCTTGTCATATGACACCGTAGCATTTGTC
TCTCAACAAGAAACAGCATCAAGGCATTATATTGGGAGCAGAGGGTAGCC
CTACGCAGGCACAAATCCACTGGCACCTTGATCTGCAACTTCTCAGTTTC
CAGGACTCTGAGAAGCAAACTTCTCTTGTTTATAAATCATCCAATGCGTT
GTGTCTTGCACTAGCAGCTTGCAACGGATAAAGACATAACTCTAGGGCTT
GCCTAAGCTTACGCTTCCAACTTAGGCCCGCCCAAAAAGATTTCCTGGTG
TGTCCTCCTTAACCGGCCCTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_b01.g1 MSMg01no401_b01.g1 CHROMAT_FILE:
MSMg01no401_b01.g1 PHD_FILE: MSMg01no401_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:36 2005
         (472 letters)



>mm_chr13_96227225_96228096
          Length = 872

 Score =  748 bits (387), Expect = 0.0
 Identities = 387/387 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagtgatggactacagtgtggaggtgaaagctgaataccaaccccaccacccccacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcagtgatggactacagtgtggaggtgaaagctgaataccaaccccaccacccccacca 328

                                                                       
Query: 61  cccccacacaccaacttacatggttttgtcccagcgacagtaatcctaaccagaacagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cccccacacaccaacttacatggttttgtcccagcgacagtaatcctaaccagaacagga 268

                                                                       
Query: 121 gaaaatgaagccattgtaaccaactaaaagtttttccaaagatctcactaaagtaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaaaatgaagccattgtaaccaactaaaagtttttccaaagatctcactaaagtaaaata 208

                                                                       
Query: 181 taatatgtactatggtttgaatgatgatgtcttcaagatttgtttagaaacttcatccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 taatatgtactatggtttgaatgatgatgtcttcaagatttgtttagaaacttcatccca 148

                                                                       
Query: 241 atgcaagaatatgaggagacagggtctcagaagtgattgagtcataagagctttatctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atgcaagaatatgaggagacagggtctcagaagtgattgagtcataagagctttatctcc 88

                                                                       
Query: 301 aggaagaggaccaatgccttcccaagggccattccttgtcatatgacaccgtagcatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  aggaagaggaccaatgccttcccaagggccattccttgtcatatgacaccgtagcatttg 28

                                      
Query: 361 tctctcaacaagaaacagcatcaaggc 387
           |||||||||||||||||||||||||||
Sbjct: 27  tctctcaacaagaaacagcatcaaggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)