Query= MSMg01no401_b04.b1 MSMg01no401_b04.b1 CHROMAT_FILE:
MSMg01no401_b04.b1 PHD_FILE: MSMg01no401_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:36 2005
(547 letters)
>mm_chr13_44441443_44442389
Length = 947
Score = 936 bits (484), Expect = 0.0
Identities = 526/542 (97%), Gaps = 6/542 (1%)
Strand = Plus / Plus
Query: 9 ggaattctgcaa---ttccctgaccatctcttatgtaccaaccactgagctaggttttgg 65
|||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 208 ggaattctgcaaacatac--tgaccatctcttatgtaccaaccactgagttaggttttgg 265
Query: 66 acacacaccgctcctgccctcttggagctcacattaggctagtgggcaaatccctgtgag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acacacaccgctcctgccctcttggagctcacattaggctagtgggcaaatccctgtgag 325
Query: 126 gtggccctaagagagtgtcagagaccagaaggttgggttgacacaatccagaatctagga 185
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 326 gtggccctaagagagtgtcagagaccagaaggttgggttgacacaatcctgaagctagga 385
Query: 186 aggctgactctgaggaaaggacgcatgccaggactccataggtactgaattttcttatac 245
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 386 aggctgactctgaggaaagaacgcatgccaggcctccataggtactgaattttcttatac 445
Query: 246 gtgatacatttttaaaatgtgtatctttatccttgtggtggtggtgcacacctttaatcc 305
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 gtgatacatttttaaaatgtgtatctttagccttgtggtggtggtgcacacctttaatcc 505
Query: 306 cagcactcaggagacagaggcaggcagatctctaaaagttcaaagccaggctggtctata 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagcactcaggagacagaggcaggcagatctctaaaagttcaaagccaggctggtctata 565
Query: 366 gagtgagtttcaggacagcaaaggatacacagagaaaccctgtctcagggtgagggtggg 425
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 gagtaagtttcaggacagcaaaggatacacagagaaaccctgtctcagggtgggggtggg 625
Query: 426 gggctatttctttatggagttcatcatgttttgagcctgatatacataggactggctaag 485
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gggctgtttctttatggagttcatcatgttttgagcctgatatacataggactggctaag 685
Query: 486 tcacactaatagacatatctatgacgtcatatgcttcctttttttttccttttgttctga 545
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 686 tcacactaatagacatatctatgacgtcatatgcttcctttttttt-ccttttgttctga 744
Query: 546 ga 547
||
Sbjct: 745 ga 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_b04.g1 MSMg01no401_b04.g1 CHROMAT_FILE:
MSMg01no401_b04.g1 PHD_FILE: MSMg01no401_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:36 2005
(243 letters)
>mm_chr13_44632622_44633265
Length = 644
Score = 437 bits (226), Expect = e-127
Identities = 235/238 (98%), Gaps = 1/238 (0%)
Strand = Plus / Minus
Query: 5 catgctgttccagagtccttttctaaaggat-gctctctcgaggcattaggttatgattg 63
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 442 catgctgttccagagtccttttctaaaggatggctctcttgaggcattaggttatgattg 383
Query: 64 atggctgggggctgtcatacagcagcaattaaatcagtgctcatctgtcttgtatcattc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atggctgggggctgtcatacagcagcaattaaatcagtgctcatctgtcttgtatcattc 323
Query: 124 gacattcaaatatcacctactcattggagggtttagaaggaggaaaggttcaatgtgaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 322 gacattcaaatatcacctactcattggagggtttagaaggaggaaaggttcaatgggaag 263
Query: 184 atttctcatttgaggaatgagacaccttgctaatctgggctccagttttattatcttg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atttctcatttgaggaatgagacaccttgctaatctgggctccagttttattatcttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space: 148590
Effective search space used: 148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
