BAC Information

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BAC

Clone NameMSMg01-401D18
Chromosome13 (Build37)
Map Location 12,647,477 - 12,647,730
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd
Downstream geneEro1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401D18.T7 (MSMg01no401_d18.b1)MSMg01-401D18.TJ (MSMg01no401_d18.g1)
ACCAG500668AG500669
length773773
length of high quality
(start - end)
254 (71 - 324)228 (73 - 300)
definitionCHROMAT_FILE: MSMg01no401_d18.b1 PHD_FILE: MSMg01no401_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:48 2005CHROMAT_FILE: MSMg01no401_d18.g1 PHD_FILE: MSMg01no401_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCTGTTTCCAGGGAACTAGTTTAGCTCAGAGACGTATTTCTTG
CATAAAACTCAGCTATAGATGATACACAGAAAATGAAGGTGATAACTCCC
TGCACGGTCAGCAGGAGATTCAGTTGAGGAGAGGGCAGGCAACCTCACTC
TCAGGGTTCCTCAGCTTCCCTTACAAAATGCTCTAACCATTGGGTCTCAG
ACTGGTGACCCATGCCCCTCCTATGACTCATGGAATTTTGCTGTTTAGCT
TACAAAGTACCACCCCCTAGACTGTTTAAATACTGAAATAATTAACAACA
CTTAGCTGTCGAGGAATTTTACATTAATATCCAAGGCTCCAAACCAGCAG
CCATTGTGCCATTAGCATGGGGGTACATGCCACTTCCCATAGGTCCCTCT
GACCCCAGCAGCCCATGAAGCCAATGTCCTTACTTCTCAGCTCCTAATAG
CAGTTGAAGAGGCTAACTTGATTACAGCCCCCAGGTGCTTCCACTCACGT
CAGTCTTTTCCTTAGATGCCTGTCCGTTTTCTGGTGATGTCTGTCCACTT
CATTAAGTCAGTCATGTGTAGATGTAAAAAAAAACTACACATAATAAAAT
CAAAAAAAACCCATAAAATCCCCTTAGGCTCACATTAATGCAAACATCTC
CTCCTAGGTTGTGAAGGACTGTGGATATTTGAAGACCGGGCTTTCTTGGA
AAGGTTATCTTATCCTATAACCT
AATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTAACGTGACTACACTCAGAATCCAGGTTGGCCTGGATTTCAC
AGAGATCTGTCCGCCTTTGCTTCCCTAGTACTGGGATTAAGGGTGTGTAC
CACCACTGTCAAGCTACTTAAACACTTTCTAGTTTAGTATGCACATGATA
TGTACAAAGATGCATATCTTTCACACCTGTTATGTGTGTTTGTGTGTATG
CGAGAGTGTATGTGTGTGTGTTTGTGTGTGTATGAGTGTGTGACTTTGNT
TNTATGTGNGNNTTTTTGTTTTTTTNGNGGGNGGGGGGGGGGNGGGGGGG
GTTTTTTTTCTCCCCCCCCCCTTGGGGCGGGTTTCCTTTTTTTTCCCTTT
CTTCTTGCTCTCCCCCCTTTCTTTTTTTTTCTCCCCTTTCTCCTTTTTCC
CCTTCTTTTTTTTTTTTCCCTCCTCTTCTCTTTCTCTCCCTCTTTTTCTT
CCCCCTCCTTCTTTCTTTTTTTCTCTCTTCTCTCTTCCTCCTTCCTCTGT
TCCCCTCTCTTTCTTTTTCTTCCCTTTCTTCTTCTCTTTCCCTTTCTCTT
TCCTCGCCTTCTTTGTTCTTTCCTCTCTTCTGCTCTTTCTTTTTTCTTTC
TCTCTCTTTTTTTTTTTTTTTTCCTCCTCTCTCCTTCTTCTCCCTTTTTT
TTTCTCTCCTTCTTTTTTTTTCTTCCTCCCTTCCTCCTTTGTTTCTTTCT
TTCTTTTTCTCCCCTTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_d18.b1 MSMg01no401_d18.b1 CHROMAT_FILE:
MSMg01no401_d18.b1 PHD_FILE: MSMg01no401_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:48 2005
         (254 letters)



>mm_chr13_12647277_12647930
          Length = 654

 Score =  484 bits (250), Expect = e-141
 Identities = 253/254 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactagtttagctcagagacgtatttcttgcataaaactcagctatagatgatacacaga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aactagtctagctcagagacgtatttcttgcataaaactcagctatagatgatacacaga 395

                                                                       
Query: 61  aaatgaaggtgataactccctgcacggtcagcaggagattcagttgaggagagggcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaatgaaggtgataactccctgcacggtcagcaggagattcagttgaggagagggcaggc 335

                                                                       
Query: 121 aacctcactctcagggttcctcagcttcccttacaaaatgctctaaccattgggtctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aacctcactctcagggttcctcagcttcccttacaaaatgctctaaccattgggtctcag 275

                                                                       
Query: 181 actggtgacccatgcccctcctatgactcatggaattttgctgtttagcttacaaagtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actggtgacccatgcccctcctatgactcatggaattttgctgtttagcttacaaagtac 215

                         
Query: 241 caccccctagactg 254
           ||||||||||||||
Sbjct: 214 caccccctagactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)