BAC Information

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BAC

Clone NameMSMg01-401M19
Chromosome13 (Build37)
Map Location 47,858,820 - 47,859,065
singlet/doubletsinglet
Overlap genenone
Upstream geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401M19.T7 (MSMg01no401_m19.b1)MSMg01-401M19.TJ (MSMg01no401_m19.g1)
ACCAG501098AG501099
length763779
length of high quality
(start - end)
243 (71 - 313)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no401_m19.b1 PHD_FILE: MSMg01no401_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:30 2005CHROMAT_FILE: MSMg01no401_m19.g1 PHD_FILE: MSMg01no401_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAAAATTTGGGCGCTAAACGACTCACATATTCAGGACCCCGCGGAATC
ATTATCTTTGCATAGCAGACCCTTCCTACTTCTTGGCTTTAAGGATGCCC
CAAGGGATGGAGACACCACTTGGGGTTTAACAGCTTTTGTCGCTGTTATA
GAGAGACCTTGTGAGCTTTTTTGAAGGTTCTGGCAGGAGAGCATAGCTAC
GAGGCTACCTTTGACCTGAGACCGGTCATTCTCCATCCCAGGAATGTGTT
TGCTTTGGAAAGGGTCCAGGTGGAGTGGTGAGGGAGGAAGGGGGCACTTG
CCTAGCCAGCCTTTTCATCNCTTTCAACCCTGGNGATCAACGGGATGACA
GATGTCTCAGCCCGATCGTCATAATATCGTACAGTTTCCTTCCCAGCAAC
CAAGTTGAGAAAGCTCACAATTGCTCGTGATATCTCTGGCTGCTGTGAGC
ACTTGCAGACAAATGGACATGCACACACAAGTGCACGTGTATGCACACAC
AAGTGCACATGCATGCTCACACATACATAGAGGCTCATAATCAAAACTAA
TTTTAGTAGGATCCTTTAAATCTCCAGTAAAATTTATTAACTAAAAGGCA
ACCTGTGGTTTATTTTTTAAGCCTATTATAGAATGAATTATCTAGCCCGT
TTTTTTTTTTTTTTTTTTTCCATCTTAACATTTCCTACATAATCCCTTAA
GTCTCATCTTAATTTTTTCCTTCGCCTTCTTTTTTCTTTCCTTCCTTTCC
CTCTCTCTCTCCC
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAAGCACTGCACACATCGATACAGTG
ACTGGGTTCGAATATTGAATAGTGTCAATAAGGGAGGAATATCCATTGAA
GAGACACCAGAATGAAGATTCGTATTTCAGATCCCAGATCAATGTTCCAA
AACTAAAATATCAAAATTGAGATAAACCAACATTGAAGACAGACTATGTG
GGCATCCATCCCTACTAGGACCTCATACCAGGGAAAGAGCCATCTGCAGT
GGCTTTCTGGCTATAGGAATGCTTTCTAGCCTTTAGAACATAAGAGAGGT
GTTAAAGGTATAGTCATTAGGCCATGTGTGGAAGGGCTCTGAGACACGGG
TCACAGCATCATCACCAATAGTGGTAGCACCACAAGATTTGGACTGCTTC
TGTGCATTATGAACAATGTGCTTAAGTCTTTGTGGACATCATTTCACCAC
ACTAACCCAACTTGCTAAGTTCTCTAGTTCTCTTCCTTTAGCATCTGAAG
AAACCAAGGTACAGACAGGTCACAACTTGTCCAAGAGCAAACTCGGCCCC
AATTTAGAGTAGAAAATATGGAATCTGCATTTGAAATGTTGTCCTTCTGG
TACCCCGGGGCTCACATTTAAATTCTATTTTTCCACCAAGAGGAAGGGAA
ACCTGGGCTCTGAGGGAACCTGTGATTTTAACTCCTGTTTGGGACCTGTT
TGTATGGGACCCAAATTGTTTTTGATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_m19.g1 MSMg01no401_m19.g1 CHROMAT_FILE:
MSMg01no401_m19.g1 PHD_FILE: MSMg01no401_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:30 2005
         (246 letters)



>mm_chr13_47858620_47859265
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagcactgcacacatcgatacagtgactgggttcgaatattgaatagtgtcaataagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agaagcactgcacacatcgatacagtgactgggttcgaatattgaatagtgtcaataagg 387

                                                                       
Query: 61  gaggaatatccattgaagagacaccagaatgaagattcgtatttcagatcccagatcaat 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaggagtatccattgaagagacaccagaatgaagattcgtatttcagatcccagatcaat 327

                                                                       
Query: 121 gttccaaaactaaaatatcaaaattgagataaaccaacattgaagacagactatgtgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttccaaaactaaaatatcaaaattgagataaaccaacattgaagacagactatgtgggc 267

                                                                       
Query: 181 atccatccctactaggacctcataccagggaaagagccatctgcagtggctttctggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atccatccctactaggacctcataccagggaaagagccatctgcagtggctttctggcta 207

                 
Query: 241 taggaa 246
           ||||||
Sbjct: 206 taggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)