BAC Information

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BAC

Clone NameMSMg01-402P19
Chromosome13 (Build37)
Map Location 52,802,736 - 52,952,091
singlet/doubletdoublet
Overlap geneAuh
Upstream geneSema4d, Gadd45g, LOC100040321, Diras2, LOC100040572, Syk
Downstream geneNfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402P19.T7 (MSMg01no402_p19.b1)MSMg01-402P19.TJ (MSMg01no402_p19.g1)
ACCAG502004AG502005
length728734
length of high quality
(start - end)
247 (73 - 319)333 (80 - 412)
definitionCHROMAT_FILE: MSMg01no402_p19.b1 PHD_FILE: MSMg01no402_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:06 2005CHROMAT_FILE: MSMg01no402_p19.g1 PHD_FILE: MSMg01no402_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,951,846 - 52,952,091)(52,802,736 - 52,803,068)
sequence
NNCCAATTAGTCCTACATGTCACTAANACGACTCACTTATCCCAGAGGAT
CCGCGGAATTCCAACTCTGCCTCCCTTCTTATAAGATCCATTGTAAAAAA
AAAAAAAAGTGGTGTGTGTGTGTGTGTGTGCGTGTGTGTACAGATGCCCA
TGGAGCCAGAAGAGGTAGCAGAGCACACATGTGGTGTGCATAAAAGCTCA
GCCACAGAGACATACACACAAATTGTTTTTTAAGTTTTTAAGTCTAAAAC
AAGCAAACCTGTGACAGGATTTTCCCTGTCCAATCACGTTAGGGCAGCAG
GATGCCTGTGACTGGACAGGGAATTTTTAGGCGGAGCTAAGAGTTACAGA
GACAGCATCTCAGAGAGAGGAGGTCAAGATGGAAGCAGAGGAATATGAGG
AACCTAATTCAGCGTGGCATTAATTAGCCACGTGTAGTTATGATATTAAA
GGATATAATAATTGGGATATTTGTCTAATCTAGGTGGGCAGCTTTTATCG
TTATCAGCTGCTTCTGACATTATTGTATTGGTCTCCTGTAAATTGAGAAT
TTATTGATACATATATCCGTTGCGTCAATTATAAGCTTCTATAGTTCTGC
CTCCTCCGGGTGGATGTATGATGCGACAGCTTATCCCTATCACAGCTCTT
TGTTTTTCCTGGCTAGATATTTCCCTTTATTTTTCTTTCTTTTATTTCTG
TTTTTCTCGTCTCCTCTGTATTATTTTN
NTAACTATGCTCCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAACACCATGGGAGAAAATG
CTGTGGGATTTGTGGCCTTAAGGTACCAAGATCCAGGGTCTGTAAAACAG
CAAAGGGTGACTAGAACTGTCCCTCCCCCATCACCTAGTTTTACTTTTGT
CACCCCTTCCTCACTGTACCAAGATTTTAGAAATCTGAAGCCATACCCTG
AACAGAACTGACCACAGAGTGTATAGTGTCTGAATTCCTTCCCTCATGGT
CATTACCGTCTGACCTCCACATTTACCCCATGTTCTCTCACAGACAGACA
GACAGGCAGACAAACAGACAGACAGATGGATGGACAGATGGATGAACAGA
CAGACATACACACAGACACGCTCACATTAAAAAGGAAATAACCAATGCAA
ATTCGTATACTTCTCTTTCCTAACTCCTGTGGTTCGATCCTAGGTCTGAC
TACTAATCACCGGTAGCCCAGGTCATGGTGATGGTCTCCACTCCTTCACA
GAAACCTCTGGAACCAGTAAGCATGTAGCATTGCTTGGGTATTCTTGTTG
CTTGTCCTCAATGACCTACCACCCATTTTTCCAAAATTCAGAACATGTTA
ATACGCAGGTATCCTCCCCCGCTAACATACACAGACGGCCTATCATTTTT
CTGGAGGTACGCACACCTAATAATGCCTCTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_p19.b1 MSMg01no402_p19.b1 CHROMAT_FILE:
MSMg01no402_p19.b1 PHD_FILE: MSMg01no402_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:06 2005
         (247 letters)



>mm_chr13_52951639_52952285
          Length = 647

 Score =  445 bits (230), Expect = e-129
 Identities = 243/248 (97%), Gaps = 3/248 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccttcttataagatccattgtaaaaaaaaaaaaaagtg-gtgtgtgtgtgtgtgtgtgc 59
           ||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| 
Sbjct: 453 cccttcttataagatccattgt--aaaaaaaaaaaagtgtgtgtgtgtgtgtgtgtgtgt 396

                                                                       
Query: 60  gtgtgtgtacagatgcccatggagccagaagaggtagcagagcacacatgtggtgtgcat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtgtgtgtacagatgcccatggagccagaagaggtagcagagcacacatgtggtgtgcat 336

                                                                       
Query: 120 aaaagctcagccacagagacatacacacaaattgttttttaagtttttaagtctaaaaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaaagctcagccacagagacatacacacaaattgttttttaagtttttaagtctaaaaca 276

                                                                       
Query: 180 agcaaacctgtgacaggattttccctgtccaatcacgttagggcagcaggatgcctgtga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 275 agcaaacctgtgacaggattttccctgtccaatcacgttagggcagcaggaggcctgtga 216

                   
Query: 240 ctggacag 247
           ||||||||
Sbjct: 215 ctggacag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no402_p19.g1 MSMg01no402_p19.g1 CHROMAT_FILE:
MSMg01no402_p19.g1 PHD_FILE: MSMg01no402_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:06 2005
         (333 letters)



>mm_chr13_52802536_52803268
          Length = 733

 Score =  569 bits (294), Expect = e-166
 Identities = 324/338 (95%), Gaps = 10/338 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaacaccatgggagaaaatgctgtgggatttgtggccttaaggtaccaagatccagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaacaccatgggagaaaatgctgtgggatttgtggccttaaggtaccaagatccagggt 260

                                                                       
Query: 61  ctgtaaaacagcaaagggtgactagaactgtccctcccccatcacctagttttacttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ctgtaaaacagcaaagggtgactagaactgtccctcccccatcacctggttttacttttg 320

                                                                       
Query: 121 tcaccccttcctcactgtaccaagattttagaaatctgaagccataccctgaacagaa-c 179
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
Sbjct: 321 tcaccccttcctcactgtgccaagactttagaaatctgaagccataccctgaaca-aagc 379

                                                                       
Query: 180 tgaccacagagtgtatagtgtctgaattccttccctcatggtcattaccgtctgacctcc 239
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgaccacagagtgtagagtgtctgaattccttccctcatggtcattaccgtctgacctcc 439

                                                                       
Query: 240 acatttaccccatgttctctcacagacagacagacaggcagacaaacagaca----gaca 295
           |||||||||||||||||||||||||||||||||||||    |||||||||||    ||||
Sbjct: 440 acatttaccccatgttctctcacagacagacagacag----acaaacagacaaacagaca 495

                                                 
Query: 296 gatggatggacagatggatgaacagacagacatacaca 333
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gatggatggacagatggatgaacagacagacatacaca 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)