BAC Information

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BAC

Clone NameMSMg01-403F22
Chromosome13 (Build37)
Map Location 74,910,785 - 75,106,207
singlet/doubletdoublet
Overlap geneCast, EG544954
Upstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, LOC622204
Downstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403F22.T7 (MSMg01no403_f22.b1)MSMg01-403F22.TJ (MSMg01no403_f22.g1)
ACCAG502296AG502297
length758801
length of high quality
(start - end)		437 (46 - 482)474 (69 - 542)
definitionCHROMAT_FILE: MSMg01no403_f22.b1 PHD_FILE: MSMg01no403_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:38 2005CHROMAT_FILE: MSMg01no403_f22.g1 PHD_FILE: MSMg01no403_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,105,805 - 75,106,207)(74,910,785 - 74,911,258)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAAACAGAGAATCATCATGATTCTGCTAGCATATTTCAACCCA
CACAGGAACTAGCTTGAAATGTCATATGATAGCTGTGTTTGAACAGATTT
TGTTCATAAGCAGATATCAAATCTTCAGTCATATTCCACCAAGAATACAT
TGTGCTTAGAATATGTCTTTGTTATTAATTAAATATCTAATTTTTCTTTC
TTTTAAATTTATTTTATTTACTATTTATACATTCACAAGTGTTTTTTATC
AAACCCACCTCATTTTCCCCCTCCAATTCCAGAGATCCAAGGATTATTCA
TATGTTTAATACTTTTACTTGTGAATACATTACCAATAAATTAAGTATTT
GATGTCTTTGATTTGACAAGTTTGTTACAGAGTGTAGTTGTATAGTCACC
ATTCTGGTCCAGTTTCAGAAGTGTTCTGTTGTCTCAAATTGTCTCCCTTT
CTGTCAGNGTAAGTGCTCGGACTAGCAAGGGCCAAGGGCATATGCTTTGT
GACTGAGGACAGGAAGGAATTTACCAATGTCATAGTCTGAGAGACCGAGA
TCAAAAAATGTGGATTCCTTTCAACCTTTCTACTCCGACTTTATTTATTA
TAATCATGCTTAAGGGGGGAATATGAAAGGGCCTCTTTTGAGCCATAAAA
AAATCTCGTCTTTCTATAACTTTTCTTTTTAGGTTTGGGACCGAAAAACC
CCCTTGGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTACAGAAATAAAACTGATGACAAAGTATGCA
TCACAACCATTCTCATACTGACTTTAATCAGAGTTTATAAAATGTCTGCA
ACTTTATTGGTGCCCATTATTAATTATTAAAAACTGAAATTTAAGTACGC
AACAATTTGTAGTAACTGTTTTGAATTAGATATATCTAAATTACATAAGA
GTTTTGGATCCTTTAAGACTAACTACATAGCAGACAGAATATTGCTTATG
AACATAATCACTCACTTTGTTAGGACAAATTCAGTTTTGGAGTAAGCAAA
AACATTTTATAAACACGTATTTGGCAAAAAATCTAATACATATTTGTTTC
TGAATGCAGACTTTATAGTTTTATCAATAATTATGCAATTAGCAGTTATT
CTAACTGCCAGGTTGAAAGTATCCAGAAACAAGCAAACTTGGATTAAACT
TCATAGCCCGCTGTATCTACCATTTGATCATAACTTCTCTGTCTCAGGAT
AATATTTGCTTTCTTATTTGCATTATGGCAATTGCGTAGTAAAAGACTTC
TCTTTATCTATGTCTAAACCTCCCGCTTTTCTCTTGTGAGCCGAGAGATG
AAACTATTGTAGCTTTTATCCCTTTCCCCCATGCTTATACCAATATTCAA
ACCTTTTTTTTTTCCTTCGCCTCTCTCATTGACACCTCATTCCCTTTGCC
CCTATATTTTTCTTCCCCTTTTATCCCTCTTATCCCCCTTTTCTCCCTCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_f22.b1 MSMg01no403_f22.b1 CHROMAT_FILE:
MSMg01no403_f22.b1 PHD_FILE: MSMg01no403_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:38 2005
         (437 letters)



>mm_chr13_75105371_75106207
          Length = 837

 Score =  764 bits (395), Expect = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 35  ctgctagcatatttcaacccacacaggaactagcttgaaatgtcatatgatagctgtgtt 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ctgctagcatatttcaacccacacaggaactagcttgaaatgtcatatgatagctgtgtt 778

                                                                       
Query: 95  tgaacagattttgttcataagcagatatcaaatcttcagtcatattccaccaagaataca 154
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tgaacagaatttgttcataagcagatatcaaatcttcagtcatattccaccaagaataca 718

                                                                       
Query: 155 ttgtgcttagaatatgtctttgttattaattaaatatctaatttttctttcttttaaatt 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttgtgcttagaatatgtctttgttattaattaaatatctaatttttctttcttttaaatt 658

                                                                       
Query: 215 tattttatttactatttatacattcacaagtgttttttatcaaacccacctcattttccc 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tattttatttactatttatacattcacaagtgttttttatcaaacccacctcattttccc 598

                                                                       
Query: 275 cctccaattccagagatccaaggattattcatatgtttaatacttttacttgtgaataca 334
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 597 cctccaattccagagatccaaggattattcataggtttaatacttttacttgtgaataca 538

                                                                       
Query: 335 ttaccaataaattaagtatttgatgtctttgatttgacaagtttgttacagagtgtagtt 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttaccaataaattaagtatttgatgtctttgatttgacaagtttgttacagagtgtagtt 478

                                                      
Query: 395 gtatagtcaccattctggtccagtttcagaagtgttctgttgt 437
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtatagtcaccattctggtccagtttcagaagtgttctgttgt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_f22.g1 MSMg01no403_f22.g1 CHROMAT_FILE:
MSMg01no403_f22.g1 PHD_FILE: MSMg01no403_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:38 2005
         (474 letters)



>mm_chr13_74910585_74911458
          Length = 874

 Score =  893 bits (462), Expect = 0.0
 Identities = 471/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacagaaataaaactgatgacaaagtatgcatcacaaccattctcatactgactttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacagaaataaaactgatgacaaagtatgcatcacaaccattctcatactgactttaat 260

                                                                       
Query: 61  cagagtttataaaatgtctgcaactttattggtgcccattattaattattaaaaactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagtttataaaatgtctgcaactttattggtgcccattattaattattaaaaactgaa 320

                                                                       
Query: 121 atttaagtacgcaacaatttgtagtaactgttttgaattagatatatctaaattacataa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttaagtatgcaacaatttgtagtaactgttttgaattagatatatctaaattacataa 380

                                                                       
Query: 181 gagttttggatcctttaagactaactacatagcagacagaatattgcttatgaacataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttttggatcctttaagactaactacatagcagacagaatattgcttatgaacataat 440

                                                                       
Query: 241 cactcactttgttaggacaaattcagttttggagtaagcaaaaacattttataaacacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactcactttgttaggacaaattcagttttggagtaagcaaaaacattttataaacacgt 500

                                                                       
Query: 301 atttggcaaaaaatctaatacatatttgtttctgaatgcagactttatagttttatcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttggcaaaaaatctaatacatatttgtttctgaatgcagactttatagttttatcaat 560

                                                                       
Query: 361 aattatgcaattagcagttattctaactgccaggttgaaagtatccagaaacaagcaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattatgcaattagcagttattctaactgccaggttgaaagtatccagaaacaagcaaac 620

                                                                 
Query: 421 ttggattaaacttcatagcccgctgtatctaccatttgatcataacttctctgt 474
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 621 ttggattaaacttcatagcccgctgtatttatcatttgatcataacttctctgt 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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