Query= MSMg01no404_c05.b1 MSMg01no404_c05.b1 CHROMAT_FILE:
MSMg01no404_c05.b1 PHD_FILE: MSMg01no404_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:41 2005
(521 letters)
>mm_chr13_39624319_39625238
Length = 920
Score = 891 bits (461), Expect = 0.0
Identities = 503/517 (97%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 5 gaattctcatttgtgacgtagacttaggaaactggcattttaactggatccccacccagt 64
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gaattctcattcctgaggtagacttaggaaactggcattttaactggatccccacccagt 661
Query: 65 tcctcttttagcctctctgatgtctttacttgaaagagcaccagcataggcttggcctgg 124
| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 660 ttctcttttagcctctctgatgtctttacttgaaagagccccagcataggctttgcctgg 601
Query: 125 agtcactggagtcacgaaagacttgacttgactggtaagaagtcagaagatcaaggatct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agtcactggagtcacgaaagacttgacttgactggtaagaagtcagaagatcaaggatct 541
Query: 185 cacttgcagttaccaaggagagagataaacaatagaacaacaaaattcatactgcattcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cacttgcagttaccaaggagagagataaacaatagaacaacaaaattcatactgcattcc 481
Query: 245 cagtactgtctgagcagtaacactgtccccacattccaaaaggctaaagacttcgaaagg 304
||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 480 cagtactgtttgagcagtaacactgtccccacatcccaaaaggctaaggacttcgaaagg 421
Query: 305 aagagaataacaggtatgtggcagaaaggttcacccggccatggcacagtggatggcagg 364
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 420 aagagaataacaggtatgtggcagaaacattcacccggccatggcacagtggatggcagg 361
Query: 365 attcacgctactttagagtatctctgtttattactctatcgccaaagtgcctgggtctca 424
||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||
Sbjct: 360 attcacgctactttagagtatctctatttattactctatagccaaa-tgcctgggtctca 302
Query: 425 caaaggatgtgtttggggcacgaaatgaaagcaataatatgtgtgactctaaaaccacaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaaggatgtgtttggggcacgaaatgaaagcaataatatgtgtgactctaaaaccacaa 242
Query: 485 aatagtttttatttctttcattcctataccactttcc 521
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatagtttttatttctttcattcctataccactttcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space: 465010
Effective search space used: 465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_c05.g1 MSMg01no404_c05.g1 CHROMAT_FILE:
MSMg01no404_c05.g1 PHD_FILE: MSMg01no404_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:41 2005
(468 letters)
>mm_chr13_39556308_39557175
Length = 868
Score = 866 bits (448), Expect = 0.0
Identities = 463/468 (98%)
Strand = Plus / Plus
Query: 1 cttaattgcaagccaaaaccagaataaaacaaacaaataatacaatgccacaactgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaattgcaagccaaaaccagaataaaacaaacaaataatacaatgccacaactgaact 260
Query: 61 tttgctcccttaagttgcatttggccggatatgtcatcagagccccagcaatggaagcag 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgctcccttaagttgcatttggcaggatatgtcatcagagccccagcaatggaagcag 320
Query: 121 taactgacagtggcattgtgtggaatacagccatagcaaaaggtgaatactgcatggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactgacagtggcattgtgtggaatacagccatagcaaaaggtgaatactgcatggtct 380
Query: 181 aaatattgctagcatagaaaataacacttaggatcatcatacataatcagtttcagcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatattgctagcatagaaaataacacttaggatcatcatacataatcagtttcagcctt 440
Query: 241 tactttcatcatcaaaacttcagctgattctcttcagaattccataatcctatatgcctc 300
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 441 tactttcatcatcaaaacttcagctgattctcttcagatttccagaatcctatatgcctc 500
Query: 301 caacacataaaacattggccagtctcatcgtgttaactgttgtaaacatatattagtttc 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacacataaagcattggccagtctcatcgtgttaactgttgtaaacatatattagtttc 560
Query: 361 acactaatatatcaaatcatactatatcaagtttatattagccgggcagtggtggagcac 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactaatatatcaaaccatactatatcaagtttatattagccgggcagtggtggagcac 620
Query: 421 acatttaatccaagcacttgggagtcagagacaggtggatttctgagt 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatttaatccaagcacttgggagtcagagacaggtggatttctgagt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
