Query= MSMg01no404_e20.b1 MSMg01no404_e20.b1 CHROMAT_FILE:
MSMg01no404_e20.b1 PHD_FILE: MSMg01no404_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:55 2005
(487 letters)
>mm_chr13_38447506_38448392
Length = 887
Score = 911 bits (471), Expect = 0.0
Identities = 483/487 (99%)
Strand = Plus / Plus
Query: 1 tatgacttagggtgtgttctgggtgatagggtagatacttaattggaccaaaagattgtg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tatgacttagggtgtgttctgggtgataggatagatacttaattggaccaaaagattgtg 260
Query: 61 ggggaaattgtaaaaaggtggtggggtaccgtattaccccttagttatagtatctgctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaaattgtaaaaaggtggtggggtaccgtattaccccttagttatagtatctgctta 320
Query: 121 atgaaagttatttgtttcttattattacataaagacatgaatcattggtgtaaacgtgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaagttatttgtttcttattattacataaagacatgaatcattggtgtaaacgtgat 380
Query: 181 aacatcgtgtctgggatgcaggtgaaatgcagcagaatttaggtttttgtctctttcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatcgtgtctgggatgcaggtgaaatgcagcagaatttaggtttttgtctctttcttt 440
Query: 241 ttttttttatttttaatttttgtacagtgtttcatgtaacctaggctggccttgaacttg 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttaaattttaatttttgtacagtgtttcatgtaacctaggctggccttgaacttg 500
Query: 301 atatgcacccaaggatgatcttggactcctaaccttgctgactcagtctccagagtgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgcacccaaggatgatcttggactcctaaccttgctgactcagtctccagagtgctg 560
Query: 361 gagttacagctgtgtcccaccatgcccaactccctccccctcttcctctccatcaatagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagttacagctgtgtcccaccatgcccaactccctccccctcttcctctccatcaatagc 620
Query: 421 actagcaacttcattgcgtttactctcactgtaacgcatgcctgtccacccatagtttgg 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 actagcaacttcattgcgtttactctcactgtaacgcatgtctgtccacccatagtttgg 680
Query: 481 tgcatct 487
|||||||
Sbjct: 681 tgcatct 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_e20.g1 MSMg01no404_e20.g1 CHROMAT_FILE:
MSMg01no404_e20.g1 PHD_FILE: MSMg01no404_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:55 2005
(528 letters)
>mm_chr13_38585914_38586837
Length = 924
Score = 971 bits (502), Expect = 0.0
Identities = 520/528 (98%), Gaps = 4/528 (0%)
Strand = Plus / Minus
Query: 1 cagacagctgttatagggggaaaatgatatttggaaacctaaaggctctgataatttcct 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cagacagctgtgatagggggaaaatgatatttggaaacctaaaggctctgataatttcct 665
Query: 61 agaaattaaaaaaaaaaaagataaacatctttaaataaaaaggcacaatgaaccctaatt 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 agaaatt----aaaaaaaagataaacatctttaaataaaaaggcacaatgaaccctaatt 609
Query: 121 ggaataaataaatttctatgatgccaaaatctggagaaattagagtatagtaaataaaaa 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 608 ggaataaataaatttctatgatgccaaaatctggagaaattcgagtatagtaaataaaaa 549
Query: 181 agaatcctcaaagataacataaattaaaggaagattaagtagattaatggcaaaattaac 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 548 agaatcctcaaaggtaacataaattaaaggaagattaagtagattaatggcaaaactaac 489
Query: 241 aaaaaatattcattcaaatattaaatgtcataagaacaaccccactaatctaaaatttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaaaaatattcattcaaatattaaatgtcataagaacaaccccactaatctaaaatttta 429
Query: 301 tacccagctataggccttcctcactttcctttgagcctctgatctctctttcctctcatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tacccagctataggccttcctcactttcctttgagcctctgatctctctttcctctcatg 369
Query: 361 tcacctgggtacatgagctcagtctcttgaagattccaaggctcctgtgtccctgtactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcacctgggtacatgagctcagtctcttgaagattccaaggctcctgtgtccctgtactc 309
Query: 421 tattccagctgtccttgtcaactatttgatcccctacctagggtctcacctggaatgccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tattccagctgtccttgtcaactatttgatcccctacctagggtctcacctggaatgccc 249
Query: 481 ctaatcaacctagttctagcttgttcttcctccaaacttccttcaaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctaatcaacctagttctagcttgttcttcctccaaacttccttcaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 924
Length adjustment: 10
Effective length of query: 518
Effective length of database: 914
Effective search space: 473452
Effective search space used: 473452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
