BAC Information

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BAC

Clone NameMSMg01-404L15
Chromosome13 (Build37)
Map Location 40,352,134 - 40,352,616
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404L15.T7 (MSMg01no404_l15.b1)MSMg01-404L15.TJ (MSMg01no404_l15.g1)
ACCAG503326AG503327
length745728
length of high quality
(start - end)
249 (65 - 313)483 (69 - 551)
definitionCHROMAT_FILE: MSMg01no404_l15.b1 PHD_FILE: MSMg01no404_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:30 2005CHROMAT_FILE: MSMg01no404_l15.g1 PHD_FILE: MSMg01no404_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TATGTATTCCCTTATAGATGCTATGGCCAATGAGTTTGCTTTTGTGATTT
CTCCCCAGGATAGTTCATATATAAAGTTGCTATCATTTATCTGCATGTTG
ATATTCTATCCCACAGTGTTCTTGAATAATTTACTGGTTGTAATAGCTTT
GGGTAGAGTCTTTAGATTTTTCTCTATATAAGTCATTTCATATATAATGA
TAATTTTTCTTCATCTTTTGTTATTTCATTATCTACCGAAAGTAAAATGT
ATGCACATTTCATTTTTTTTACGGGAAAATGTAGCATCAAGAAAAAAAAA
AGCAATGAATAAAAATCCTTAGATGGTGTGTGATTGGAGTCAGGGGACAG
ATGTTATACAGGGGCTGGTGAGATGTCTCAGAAGCTGAAGTCACTTGAAA
TACACACTGATGACCTCAGTTTTGCTGTGAAACTCTCTGAAGGTGTAAGG
ATAGTACTGATTCTACAGCATTGCTCTCGGACCTCCTCATATACAGAATG
ACTACCCCCATATATCACCATACAGCATATGCACACACTCAATTAATAAT
TAATTAACTAATAATTAATTATTTATAAATAAAATTTCCAGGATGCTGAA
CTGGTATTCTATTTTTAAAGAATTTACTAAACCTTATAATGTTTAAGTTT
AAAAAAGAAATTCCTATAACTGAATTATGTTCCCTATTGCCAAAA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCATCTCTACATCGGATAGAGCTCACTGTTA
ACTTCCACATAAGATTTTTTATGAGCTATATATAAGCTTTATATGTTTTG
TTACTGTCCCACTAAGAGTTATAAAGCACCAGGCAATACTTGTCTGAAAG
GCGTGCTTCCCTAACAGGCAATCTACAAAGTAGACTGCCTCCCTCAGCTG
TGGTCTGTGTTAGCTCACGGCGAGGAAAGAAAATTTGTAGGTCGCCTGAT
ACTTGATCAAGCCATCTGGAGTGTACAAGGAGCAGGAGCTGCTAACTTCG
TAGGTCTTCCTATGTCATTCTCTCAAACACTTCGGCGACTCCCTCAGACT
TAGCATTCCGAGTCCCCTGTCATAGTCCACATTGGATTGCTTTTCTAATA
CTGGTCTGCAAAGAATCTCAGGAATAGACAGAAAGGGGGAGGTCTAGAAA
TAGCCTGGAGAAGGAGAATTCCAGAAGGGTCTTCTAGAATAAGTCACTTC
AGAAGTGTCCCACTCATGGACAGGGGATTGATATGTAGCAAAATCAGAAA
GGACGAATTAAAAACAACACAATAAAAATTTCCCATAGTTTGTCCTTAAA
AAGACTGTCCATGTGGACTATGTGTGGGCTCCTCTATTTCTGTGATGAGG
GGAAAGACATCCTCTAAATGACCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_l15.g1 MSMg01no404_l15.g1 CHROMAT_FILE:
MSMg01no404_l15.g1 PHD_FILE: MSMg01no404_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:30 2005
         (483 letters)



>mm_chr13_40351934_40352816
          Length = 883

 Score =  926 bits (479), Expect = 0.0
 Identities = 482/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatctctacatcggatagagctcactgttaacttccacataagattttttatgagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctcatctctacatcggatagagctcactgttaacttccacataagattttttatgagcta 624

                                                                       
Query: 61  tatataagctttatatgttttgttactgtcccactaagagttataaagcaccaggcaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatataagctttatatgttttgttactgtcccactaagagttataaagcaccaggcaata 564

                                                                       
Query: 121 cttgtctgaaaggcgtgcttccctaacaggcaatctacaaagtagactgcctccctcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttgtctgaaaggcgtgcttccctaacaggcaatctacaaagtagactgcctccctcagc 504

                                                                       
Query: 181 tgtggtctgtgttagctcacggcgaggaaagaaaatttgtaggtcgcctgatacttgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtggtctgtgttagctcacggcgaggaaagaaaatttgtaggtcgcctgatacttgatc 444

                                                                       
Query: 241 aagccatctggagtgtacaaggagcaggagctgctaacttcgtaggtcttcctatgtcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagccatctggagtgtacaaggagcaggagctgctaacttcgtaggtcttcctatgtcat 384

                                                                       
Query: 301 tctctcaaacacttcggcgactccctcagacttagcattccgagtcccctgtcatagtcc 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctctcaaacacttcagcgactccctcagacttagcattccgagtcccctgtcatagtcc 324

                                                                       
Query: 361 acattggattgcttttctaatactggtctgcaaagaatctcaggaatagacagaaagggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acattggattgcttttctaatactggtctgcaaagaatctcaggaatagacagaaagggg 264

                                                                       
Query: 421 gaggtctagaaatagcctggagaaggagaattccagaagggtcttctagaataagtcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaggtctagaaatagcctggagaaggagaattccagaagggtcttctagaataagtcact 204

              
Query: 481 tca 483
           |||
Sbjct: 203 tca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)