BAC Information

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BAC

Clone NameMSMg01-405A10
Chromosome13 (Build37)
Map Location 10,576,877 - 10,577,140
singlet/doubletsinglet
Overlap genenone
Upstream geneDip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405A10.T7 (MSMg01no405_a10.b1)MSMg01-405A10.TJ (MSMg01no405_a10.g1)
ACCAG503554AG503555
length779806
length of high quality
(start - end)
484 (74 - 557)249 (79 - 327)
definitionCHROMAT_FILE: MSMg01no405_a10.b1 PHD_FILE: MSMg01no405_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:54 2005CHROMAT_FILE: MSMg01no405_a10.g1 PHD_FILE: MSMg01no405_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACAGATGACTCTCTAATGGCTGAGAACCATTTTAAGA
CATGTTCACATCCTTAGTTATCCAGGAAATACAAATCAAAACAACTCTGA
GGTTCCATCTTACACCAGTCAGAATGACTAAGATCAAAAACTCAATTAAT
AGCACATGCTCATGAGAATGAATGTAGAGAAAGGGGAATACTCCTCCATT
GCTAGAGGAAGTGCAAACTTGTGCAACCACTTTTGAAATTAATTTGGAAA
CCAGAAACCTGGGAATAGTTTTGCATCAAGACCCAGCTATACCACACCTG
GACATATACTCAAAAGATGCTCCACTAACACACAAAGACTCTTATTCAAC
TATGTTCATAGCAGCTTTATTCTCAATATCCCCAAACTGGAAGCAACCTA
GATGTACCCTAACTGAAGAATGAATAAAGAAAATGTTCTACATTTATACA
ATGGAATCCTACTCCTCTATTAAAAACAAAGACATCATGAATTTTGCAAG
CTAATGGGACTTGACAATATCATCCTGAGTGAGGTAACCCATCCCCAAAG
GGCATGCATGTTATATCTTCACCTTGTAGTTTTGTTTAAATATGGTATTT
CTACCCTAAAGATTTAAAATTGTTTAGGGGACATTCCTGTGATTTAAAAA
AACAATGCCCTTTTCTTGAGAATCCTAATGGAAAGAACAAAAAAAACATT
TTTCCCACTAAGGAAAAAGTTTCCCACCC
NCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTATTAGACTGAGTAGCTTT
TTAAAAAAATATGGCTACTAGAGTTTTCCGTGTTCAAGATTATATTACCT
GCAAAAAAATATTTTTTTTTCTTTCCAATTTGGCTAGCATTTATTTCTCT
TCCCTGGTGTGTGTGTGGGTGTGTGTGTGTGTATACTTCATTACCATGTT
GAATAGTGGTGTTCTTCTCATCTTATTAATTTTTTCAAGAGAAATTCTTT
CACTTTTTCTCAGATATTGTGATGATAGCTGTAGATCTTTTTGTGGCCTT
TATGTGATGGAACATTTATATATAGATTGTGAATTTTTGCCCACATAACA
ATGTTGAACTCTTATGATGCCCGTTAGTGGCTATGTGTTGCACTACGTCA
TAGTCACATAACCCTGACCCCTCCTTCACCTCTTATTTCTCATTTTTCCC
TATTTCCTTTCCGCTGTTTTACACTCCTCACCATTTTTCATTCTCTTTTT
ATCAAACTCCCCACCTTACTTTTACTTTTTTTATCGTCTCACATATCTCT
TTTCCCCTTTTATTTTCGCGCCGCTCTTTTTCTCCATCACCATACCCTAT
TTCTCTTATTCCCCCTCTTTTACTTCCCCCTTTTTCCTCTTTTCTTTTTA
TATTTCCCTCTATTTCTTCTCTCCCTTTTTTTCCCCTCCTTATTCTTCGG
TTTTCCTCTTATTACTCCTTCTATATTTCTTCTCCCCTGACTTTTTCCAT
TTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_a10.g1 MSMg01no405_a10.g1 CHROMAT_FILE:
MSMg01no405_a10.g1 PHD_FILE: MSMg01no405_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:54 2005
         (249 letters)



>mm_chr13_10576677_10577324
          Length = 648

 Score =  435 bits (225), Expect = e-126
 Identities = 248/265 (93%), Gaps = 17/265 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttattagactgagtagctttttaaaaaaatatggctactagagttttccgtgttcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttattagactgagtagctttttaaaaaaatatggctactagagttttccgtgttcaag 260

                                                                       
Query: 61  attatattacctgcaaaaaaatatttttttttctttccaatttggctagcatttatttct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatattacctgcaaaaaaata-ttttttttctttccaatttggctagcatttatttct 319

                                                                       
Query: 121 cttccctggtgtgtgtgtg---------------g-gtgtgtgtgtgtgtatacttcatt 164
           |||||||||||||||||||               | ||||||||||||||||||||||||
Sbjct: 320 cttccctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacttcatt 379

                                                                       
Query: 165 accatgttgaatagtggtgttcttctcatcttattaattttttcaagagaaattctttca 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accatgttgaatagtggtgttcttctcatcttattaattttttcaagagaaattctttca 439

                                    
Query: 225 ctttttctcagatattgtgatgata 249
           |||||||||||||||||||||||||
Sbjct: 440 ctttttctcagatattgtgatgata 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)