BAC Information

Click to search

BAC

Clone NameMSMg01-405C06
Chromosome13 (Build37)
Map Location 18,644,545 - 18,645,087
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405C06.T7 (MSMg01no405_c06.b1)MSMg01-405C06.TJ (MSMg01no405_c06.g1)
ACCAG503642AG503643
length744745
length of high quality
(start - end)		546 (54 - 599)479 (82 - 560)
definitionCHROMAT_FILE: MSMg01no405_c06.b1 PHD_FILE: MSMg01no405_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:02 2005CHROMAT_FILE: MSMg01no405_c06.g1 PHD_FILE: MSMg01no405_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGA
TGCGCGGAATTCTTTGCTTTCCGGGTATTTCTTCTCTCCTGATTCAGACC
TTAAAAAGCAACTTGAGATTCTTACCAAACCTCATATACCTCCTATTAAA
CAACATCTTCCACCCAAATCCATAACTAATAATAATGTTTTTTATTAAGC
TCTTCTGTGAGACAATATGTCTGGTACAAAGCTCCTCTCCACACTGTTTT
AATTACAATAAATCACCTTCATTATGACGCATACTTCAATATAGCATGTC
GGCTGCTTAGCTACCTCAGTTACTCCCATAATGAGGCGAGAGAAAGCACG
CATGTCTCAAAGAAAGTTATTTACACTCACACTGAAAAATTGTACAGTAT
CCCCTGGCTTTGCAACATGAATCTCAACAACTTTTATCTTACCTTACTGT
TCAGACATCAGGGCTGAGAAGACAGGATAAAGGAAAGGAAGAGAGAAGGT
ACATCTGAGGATGCTGTTTGCACAAATAACAGTGCTCCGAATACATCCAC
TAGCGTGGAAAAATAAGTCCTTGCAGTACAATCATTTCTCTATAAATGTA
TGAGAGTATTTACTGCCTGCTGCCACAAATCAGCAACGAGATGCTAGGCT
GTGGTGTGCAAGTTCCCAGGGACTGAGTGTCAAAGCAACTTCCCTGAAGC
CCCCTGAATACAATGCCGGGAAATTCTCCTGAAAGGGGGAAAAC

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGTTCTGTACCT
CATTTTTAAATTGGATTATTTAGTTTGTTGATGTCTAGTTTCCTGAGTTC
TTTATATATTTTGTATGTCAGCCATGTCAGATGTTTACTTAGTGAAAATC
TTTTCCCATTCTATAGGCTGCCATTTTGTCATATTGACTGTATCCTTTTC
CTTAGAGAAGCTTTTCAGTTTCATGAGGTCCCATTTATTAACTGTTGATC
TTAGTGCCTGAGCTGTTGGGAGTCTGTTCAGGAAATTTTCTCCTGTGCCA
ATGTCTTCAAGGATATTCCCTACTCTTTCTTCTATCAGATTTAGTGTATC
TGACCAGGAACCTAGGAAAATGGAAACTCTCAGGAGTCTATGAGAGTGAC
CCTTGCTATAACTCATAGCAATGTGGGATATGGAGCCAGAACCAGCCATC
TGGTGTAACCAGGCAAGACTTCCAATGGAGGGACTGGAACACCTACCCTG
CCACAAAACCTTAGACACGCAATTTGTTCTACCTACAAGATGAGCAGGGG
TAAAAAGATGGAGCAAATTTTGAGGGAAGGCCCAACCAATGACTGGCCGA
GCTTGAGATCCTTGCCATGTTATGGAAATCTCCCTCGCCACTATTAAAAA
AATCCCGGTATCTCTGGCTAATGGTATCCCATTTTATCGTTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_c06.b1 MSMg01no405_c06.b1 CHROMAT_FILE:
MSMg01no405_c06.b1 PHD_FILE: MSMg01no405_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:02 2005
         (546 letters)



>mm_chr13_18644342_18645287
          Length = 946

 Score = 1019 bits (527), Expect = 0.0
 Identities = 539/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttgctttccgggtatttcttctctcctgattcagaccttaaaaagcaacttga 63
           ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 gaattctttgcttgctgggtatttcttctctcctgatttagaccttaaaaagcaacttga 263

                                                                       
Query: 64  gattcttaccaaacctcatatacctcctattaaacaacatcttccacccaaatccataac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gattcttaccaaacctcatatacctcctattaaacaacatcttccacccaaatccataac 323

                                                                       
Query: 124 taataataatgttttttattaagctcttctgtgagacaatatgtctggtacaaagctcct 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacaataatgttttttattaagctcttctgtgagacaatatgtctggtacaaagctcct 383

                                                                       
Query: 184 ctccacactgttttaattacaataaatcaccttcattatgacgcatacttcaatatagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctccacactgttttaattacaataaatcaccttcattatgacgcatacttcaatatagca 443

                                                                       
Query: 244 tgtcggctgcttagctacctcagttactcccataatgaggcgagagaaagcacgcatgtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtcggctgcttagctacctcagttactcccataatgaggcgagagaaagcacgcatgtc 503

                                                                       
Query: 304 tcaaagaaagttatttacactcacactgaaaaattgtacagtatcccctggctttgcaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcaaagaaagttatttacactcacactgaaaaattgtacagtatcccctggctttgcaac 563

                                                                       
Query: 364 atgaatctcaacaacttttatcttaccttactgttcagacatcagggctgagaagacagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgaatctcaacaacttttatcttaccttactgttcagacatcagggctgagaagacagg 623

                                                                       
Query: 424 ataaaggaaaggaagagagaaggtacatctgaggatgctgtttgcacaaataacagtgct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ataaaggaaaggaagagagaaggtacatctgaggatgctgtttgcacaaataacagtgct 683

                                                                       
Query: 484 ccgaatacatccactagcgtggaaaaataagtccttgcagtacaatcatttctctataaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccgaatacatccactagcgtggaaaaataagtccttgcagtacaatcatttctctataaa 743

              
Query: 544 tgt 546
           |||
Sbjct: 744 tgt 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |