BAC Information

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BAC

Clone NameMSMg01-405E18
Chromosome13 (Build37)
Map Location 117,649,037 - 117,649,452
singlet/doubletsinglet
Overlap geneParp8
Upstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169
Downstream geneLOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405E18.T7 (MSMg01no405_e18.b1)MSMg01-405E18.TJ (MSMg01no405_e18.g1)
ACCAG503761AG503762
length778867
length of high quality
(start - end)
436 (50 - 485)133 (79 - 211)
definitionCHROMAT_FILE: MSMg01no405_e18.b1 PHD_FILE: MSMg01no405_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:14 2005CHROMAT_FILE: MSMg01no405_e18.g1 PHD_FILE: MSMg01no405_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGATTATCCGTAGGACTAAGAACTGCTTGGCCCAAGGACC
TGACATATTTGGCCCCATCTTCTGCAGACAAATGTTTTATGTGATCCTTC
CTGATGTTACACTGGAGAACTTGCTAATTAACTTGCTTGTTAATCTCATC
CTCACTGACTTACTCTTTCCTAGTTGCTCCACTCATAAGGGAGGCACAAC
CCTGTGGTTGTGTCTTTTATGAAGGAAGAGACTAAAAGCTGTAATCAGAA
TGTACAATAATGACTGAATGCATTTTCTCCGTGGTGTGTTCTGAATTTAT
CAGTCTTACCTAATGAGTTCCATCTACTGAGGTGCAAAAAGAAAAGAAAA
AAAAAGACATCTCATTGTGTTTACAAAGCAACGAAAATTACCTTAATAAA
GATTTCTCCTGTGAATCATTTTGAAAGCATCTGGGCACACTGATTTTCAT
CAGGCAGCTTTGCTTCTCTGTTCACTACTGTGGAAAAAAGGAGTCCTTTC
CTCCTATAATTAATCCTCTTACAATGTTTTATGTATCCATTTATGAAAAA
AAAAAAAGGGCCCATTGAGAACTGAGCAATTTTCTCCTTGTTAAAGTTGC
CCGCTCCTTTCCCTTATATTCCAAATTTTTTTTCCTTCCCAATAAATACA
CTCTCTCAAGAAAACCCCGTGAATTCACCCTTTTCTTATACTCCACCGCC
CTCCTTTAACACACATATTTATCTCCTN
TTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCACCATGGCTTGGCATCA
GGTATCTTTACCCACTGTGTCTCTGGCTTTAATCACCGGCACTTTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTTTATCTCTCTCTCCCTCCCTCCCTC
CCTCCCTCGCTCGAGCGCTCCATCTATCCCTCACAATTTTTACCTTGCCT
GCTTCCTGTTGCTTCTCATTAATTTCTAAGGTCCACACAGGCGGATCAGA
GCATGATTGGGTTTGAAGGCTATCTGTTCATATATGCGAGTGTGGAACTT
GCTCTCTTTAAAAGTGTTGTTACATCGGGCCATTCCTGTTTGCCCTCTTT
GTCTTATTTTGTCCGTGGTTTTATCCCACCTTAATCGCGCTTATTTATAT
GCCCGATCGATCTTTAATTCCTCTTATATCCTTCCGGATTCTTTCCACGG
TTTCTTTTACTCGCTTTTTTCCCTTTTTTCCTCTTTCCTCATCCTTATCC
TACACCACCCCCAATTTTGGAAGTTTCTCCTTTTATTGGCTCCTCAGCCC
TCGCCTGGCTACCGTCCATTTATGCGTCCCCCCACCTGTATTTATTGTTG
CTAGTTTTTTATTGCCCCGACACTATTAGATCCCCGTTACTTCCGTTTTT
TTCTGTTAACCAACACATTTCCCCTCCCTCTTTTACATTTTACGCTTTAT
TCTCTCATCCATACTTTTTTTCTTCTCCCCTACTTTTCTCCTTTCTTAAT
TTATTGTGCTCCCTTCATGTCCCTCCTCCTTTATATATTTCTACCTCCAC
CTGATTTCTTTTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_e18.b1 MSMg01no405_e18.b1 CHROMAT_FILE:
MSMg01no405_e18.b1 PHD_FILE: MSMg01no405_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:14 2005
         (436 letters)



>mm_chr13_117648817_117649652
          Length = 836

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  gtaggactaagaactgcttggcccaaggacctgacatatttggccccatcttctgcagac 80
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 221 gtaggactaagaactgcttggcccaaggacctgacatatttggccctatcttctgcagac 280

                                                                       
Query: 81  aaatgttttatgtgatccttcctgatgttacactggagaacttgctaattaacttgcttg 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aaatgttttatgtgatccttcctgatgttacactggagaacttgctaattaacttgcttg 340

                                                                       
Query: 141 ttaatctcatcctcactgacttactctttcctagttgctccactcataagggaggcacaa 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttaatctcatcctcactgacttactctttcctagttgctccactcataagggaggcacaa 400

                                                                       
Query: 201 ccctgtggttgtgtcttttatgaaggaagagactaaaagctgtaatcagaatgtacaata 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccctgtggttgtgtcttttatgaaggaagagactaaaagctgtaatcagaatgtacaata 460

                                                                       
Query: 261 atgactgaatgcattttctccgtggtgtgttctgaatttatcagtcttacctaatgagtt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atgactgaatgcattttctccgtggtgtgttctgaatttatcagtcttacctaatgagtt 520

                                                                       
Query: 321 ccatctactgaggtgcaaaaagaaaagaaaaaaaaagacatctcattgtgtttacaaagc 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ccatctactgaggtgcaaaaagaaaagaaaaaaaaagacatctcattgtgtttacaaagc 580

                                                                   
Query: 381 aacgaaaattaccttaataaagatttctcctgtgaatcattttgaaagcatctggg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aacgaaaattaccttaataaagatttctcctgtgaatcattttgaaagcatctggg 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)