Query= MSMg01no405_f02.b1 MSMg01no405_f02.b1 CHROMAT_FILE:
MSMg01no405_f02.b1 PHD_FILE: MSMg01no405_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:16 2005
(270 letters)
>mm_chr13_87074574_87075243
Length = 670
Score = 455 bits (235), Expect = e-132
Identities = 260/269 (96%), Gaps = 6/269 (2%)
Strand = Plus / Minus
Query: 5 gaattcctgat-ttccac-aagatttttaccatgagggagtgatgaattttgtataggat 62
||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcctgatctt--actaagacttttaccatgagggagtgatgaattttgtataggat 464
Query: 63 tcatttttaaatttactctttaagacttttaaaaatattaaaactaatatgatcattcac 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 463 tcatttttaaatttactctttaagacttttaaaaacattaaaactaatatgatcattcac 404
Query: 123 ttttgatatattttttaattcatagatttaactttttttttcaaaagcatttaagctaca 182
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 403 ttttgatatattttttaattcatagatttaactttttttt-caaaagcatttaagctaca 345
Query: 183 ataaaaatggaaagatttttt-cccttcttttgaatagttcaagtttggatatgtcacta 241
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 344 ataaaaatggaaagatttttttcccttcttttgagtagttcaagtttggatatgtcacta 285
Query: 242 tgttattgaggatcttctaaagaagaagg 270
|||||||||||||||||||||||||||||
Sbjct: 284 tgttattgaggatcttctaaagaagaagg 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no405_f02.g1 MSMg01no405_f02.g1 CHROMAT_FILE:
MSMg01no405_f02.g1 PHD_FILE: MSMg01no405_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:16 2005
(501 letters)
>mm_chr13_86910914_86911814
Length = 901
Score = 882 bits (456), Expect = 0.0
Identities = 484/498 (97%), Gaps = 9/498 (1%)
Strand = Plus / Plus
Query: 4 ccagccagtgagattctttctctatttaaagtaacatttaaaatctatagcaaatcaacc 63
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 213 ccagccagtgagattctttctctatttaaagtaacatttaaaatctataccaaatcaacc 272
Query: 64 tattatttatttcttctacttaggtacctttgtatcctcatcaggaggtaattagcagta 123
|||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 273 tattatttatttcttctacttaggtacc----ta-----atcaggaggtaattagcagta 323
Query: 124 atgatagcagcactgagagcaatacttgtatgctgtgaaatgaagcacaactggccatgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgatagcagcactgagagcaatacttgtatgctgtgaaatgaagcacaactggccatgc 383
Query: 184 attttttcattggctactttaatgggtgctataaaattatttttctgacaaggatttgcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attttttcattggctactttaatgggtgctataaaattatttttctgacaaggatttgcc 443
Query: 244 atgtcagagatgagtacagctgagcagcaggtagcccagttaaggtagttagaatttatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 atgtcagagatgagtacagctgagcagcaggtagcccagttaaggtagttagattttatt 503
Query: 304 cagacatactcttgaaatatgtgatagaattcagagcaaaattcctgtagcaaaatgtag 363
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagacatactcttgaaagatgtgatagaattcagagcaaaattcctgtagcaaaatgtag 563
Query: 364 gatccttttctataacatgttgagatttcattggtacaattttcttgtcatatagagaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatccttttctataacatgttgagatttcattggtacaattttcttgtcatatagagaga 623
Query: 424 cactatttagcagtaggcatccaagtctgctgactaatacagtcttctccccctattttc 483
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 624 cactatttagcagtaggcatccaagtctgctgactcatacagtcttctccccctatcttc 683
Query: 484 ccttccccgagactaagg 501
||||||||||||||||||
Sbjct: 684 ccttccccgagactaagg 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
