Query= MSMg01no405_i15.b1 MSMg01no405_i15.b1 CHROMAT_FILE:
MSMg01no405_i15.b1 PHD_FILE: MSMg01no405_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:33 2005
(522 letters)
>mm_chr13_54205299_54206221
Length = 923
Score = 907 bits (469), Expect = 0.0
Identities = 510/525 (97%), Gaps = 5/525 (0%)
Strand = Plus / Plus
Query: 1 aactaaaagtatcaggttaaaatggtcaaatagagacgtctggccccattccttcctgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactaaaagtatcaggttaaaatggtcaaatagagacgtctggccccattccttcctgtc 260
Query: 61 taacagtcaaggttgacactttgagagtaaggagggcactctgccaccaggagggaaact 120
|||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 261 taacagtcaaggttgacactttgagaatgaggagggcactctgcccccaggagggaaact 320
Query: 121 gaggcctgctgtcatgtggcacttttcaagggtgtcttggtcacttgaaactatatcagt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gaggactgctgtcatgtggcacttttcaagggtgtcttggtcacttgaaactataccaga 380
Query: 181 agcccagatcagttgcccaatctacatctctccataaagcactgagaaccagaattagtc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 agcccagatcagttgcccaatctacagctctccataaagcactgagaaccagaattagtc 440
Query: 241 nnttt--tttctgtgttcaggacttttctaaatgctaaagaaa-tagtatcctcaggcgg 297
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 --tttcttttctgtgttcaggacttttctaaatgctaaagaaaatagtatcctcaggcgg 498
Query: 298 taatgatagaagtgagcagtcatctaaatctacataaagcgtagtgcctaacaccatcca 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 499 taatgatagaagtgagcagtcatctaaatctacataaagtgtagtgcctaacaccatcca 558
Query: 358 accttgttagagttgtacattctttttttctccattaatttattcattttaacattccaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 accttgttagagttgtacattctttttttctccattaatttattcattttaacattccaa 618
Query: 418 tcgctgatccccctctcatacaatctacccacctccccttctcagagagggttggctccc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 619 tcgctgatccccctctcatacaatctacccacctccccttctcagagagggttggcttcc 678
Query: 478 ctaggtatccccaccctggtcatcaagtctctgcagggctaggtg 522
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 679 ctaggtatctccaccctggtcatcaagtctctgcagggctaggtg 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_i15.g1 MSMg01no405_i15.g1 CHROMAT_FILE:
MSMg01no405_i15.g1 PHD_FILE: MSMg01no405_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:33 2005
(429 letters)
>mm_chr13_54393349_54394177
Length = 829
Score = 775 bits (401), Expect = 0.0
Identities = 422/433 (97%), Gaps = 8/433 (1%)
Strand = Plus / Minus
Query: 1 ataaacgtgtagaaattgattttctgaattctgaaggctggcgagtctgagatgggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ataaacgtgtagaaattgattttctgaattctgaaggctggcgagtctgagatgggtgag 570
Query: 61 ctaatacatgtggggacaaacacaatgtccccataactaagagtgtgatttatcccacga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctaatacatgtggggacaaacacaatgtccccataactaagagtgtgatttatcccacga 510
Query: 121 gccctttcctacgcagcacgaatccatccacgacactgtctgcaaggtaccacttcccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gccctttcctacgcagcacgaatccatccacgacactgtctgcaaggtaccacttcccag 450
Query: 181 tactgctgcactggagtttcaggggacacctgtagctagcagctgctgcagtgcttggtc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tactgctgcattggagtttcaggggacacctgtagctagcagctgctgcagtgcttggtc 390
Query: 241 aggttttt----tgagccctgccctgggtaccttcctgttaggctgtcaccatcagggca 296
||| | ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 389 agg----taggatgagccctgcccttggcaccttcctgttaggctgtcaccatcagggca 334
Query: 297 aatgcacaccacctcagaaagtccagcacgggacattccagccccgagagacagaatttt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aatgcacaccacctcagaaagtccagcacgggacattccagccccgagagacagaatttt 274
Query: 357 cacctttatccatttcacacttgacatgtttttataacaagtattttatattttattcat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cacctttatccatttcacacttgacatgtttttataacaagtattttatattttattcat 214
Query: 417 gtatatgtggttg 429
|||||||||||||
Sbjct: 213 gtatatgtggttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
