Query= MSMg01no405_l02.b1 MSMg01no405_l02.b1 CHROMAT_FILE:
MSMg01no405_l02.b1 PHD_FILE: MSMg01no405_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:45 2005
(549 letters)
>mm_chr13_49828381_49829329
Length = 949
Score = 944 bits (488), Expect = 0.0
Identities = 533/548 (97%), Gaps = 4/548 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaagcctttcc-ttcctcgtggaggattagccgctgttgcctcctcccatcccc 62
|||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 204 ggaattcaagcc-atcctttcctcgtggaggaatggccgctgttgcctcctcccatcccc 262
Query: 63 aagagtgtagtcaccaggtattacctcccagggaagcttggtgcaacttgggacccagaa 122
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 gagagtgtagtcaccaggtattacctcccagggaagtttggtgcaacttgggacccagaa 322
Query: 123 cttggttgaggattaatacgtaggctcaattaattcaatgcctgcatggttggtctgtgt 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctttgttgaggattaatacgtaggctcaattaattcaatgcctgcatggttggtctgtgt 382
Query: 183 ctcacaggttaccaaccagtccacacacttcgcagctccctgccctcagtaacctcacta 242
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 ctcaaaggttaccaaccagtccacacacttcgcagctccctgccctcagtcacctcacta 442
Query: 243 acataagataatatgtaatcaaagccgtactgtatgcaacaaagacaaacctatcaggac 302
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 acataagataatatgtaatcaaagccgtactgtaagcaacaaagacaaacctatcaggac 502
Query: 303 gtgccaagagatgagagattccccactagaagctaggacagaagtcaaagtggccttaga 362
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 503 gtgccaagagttgagagattccccactaaaagctaggacagaagtcaaagtggccttaga 562
Query: 363 atgggcctcaagataggcagttaacatttttttatatgtttactcatatagaatattgac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgggcctcaagataggcagttaacatttttttatatgtttactcatatagaatattgac 622
Query: 423 tttttgaaatttttctctcttctagaaattacagaagatatcccaatgaagactttgaat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttttgaaatttttctctcttctagaaattacagaagatatcccaatgaagactttgaat 682
Query: 483 atgaagactgtatatgtttctgtcttgccaacaactgtc-gatggctaacagctatcagt 541
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 683 atgaagactgtatatgtttctgtcttgccaacaactg-cagatggctaacagctatcagt 741
Query: 542 atgccttc 549
||||||||
Sbjct: 742 atgccttc 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_l02.g1 MSMg01no405_l02.g1 CHROMAT_FILE:
MSMg01no405_l02.g1 PHD_FILE: MSMg01no405_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:45 2005
(516 letters)
>mm_chr13_49987548_49988463
Length = 916
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%)
Strand = Plus / Minus
Query: 1 ctgttttcagacccaggggaaaaacaatctgaataaagctagctgttgcatttatttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctgttttcagacccaggggaaaaacaatctgaataaagctagctgttgcatttatttgcc 743
Query: 61 agcctatgcatttattcagtctctgtaattgtccgttgtttgcctctgcaccaaaattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agcctatgcatttattcagtctctgtaattgtccgttgtttgcctctgcaccaaaattat 683
Query: 121 tagtctacagcaaactaacaactttttgcttccagaatagggcctatggaagagctgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 682 tagtctacagcaaactaacaactttttgcttccagaatagggcctatggaaaagctgttc 623
Query: 181 ctaatactgataaagggatacaggcatatcttcaaactgaaaccaatccccactaaaaag 240
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 622 ctaatactgataaagggatacaggcatatcttcaaactaaaaccaacccccactaaaaag 563
Query: 241 gactgaattggaaaggcaatacaggttctaattaagcaaccattagccagcagatgggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gactgaattggaaaggcaatacaggttctaattaagcaaccattagccagcagatgggca 503
Query: 301 ccttttcctgggactccctacccatgaaagctatcaggtcagcctccatcattcctgagc 360
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 502 ccttttcctgggactccctacccacgaaagctatcaggtaagcctccatcattcctgagc 443
Query: 361 attgtcagatgctcaagctccatgaggaggcacagaattaacacaaggcaacaaatgtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attgtcagatgctcaagctccatgaggaggcacagaattaacacaaggcaacaaatgtgg 383
Query: 421 gagaacaagaagcaaccctgtcctcagattcctcccatgcaggaaactgaccctgcttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gagaacaagaagcaaccctgtcctcagattcctcccatgcaggaaactgaccctgcttca 323
Query: 481 gggacatttcccaacaaacagtgatcatgttttcaa 516
||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggacatttcccaacaaacagtgatcatgttttcaa 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
