BAC Information

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BAC

Clone NameMSMg01-406G13
Chromosome13 (Build37)
Map Location 107,816,577 - 107,993,011
singlet/doubletdoublet
Overlap geneLOC100040322
Upstream geneOlfr717-ps1, LOC631097, EG620949, Ipo11, Dimt1, Kif2a
Downstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406G13.T7 (MSMg01no406_g13.b1)MSMg01-406G13.TJ (MSMg01no406_g13.g1)
ACCAG504611AG504612
length780738
length of high quality
(start - end)		157 (81 - 237)433 (81 - 513)
definitionCHROMAT_FILE: MSMg01no406_g13.b1 PHD_FILE: MSMg01no406_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:42 2005CHROMAT_FILE: MSMg01no406_g13.g1 PHD_FILE: MSMg01no406_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,816,577 - 107,816,734)(107,992,586 - 107,993,011)
sequence
GGCTTTTCAAAAATTGTGGCCGCTANANGANNNACTAATACGTGACCTGT
GGNGNANNCCNAATTTTACAAACACTCTCCTACCTGCTCTTGTTGCACCC
ATGTGCCACTGTGGTTGACTTATTTTGATGTCCCCCACCAAATCTTTCAT
ATGGTATTTGAACTAAGCAGAGTTAATCATCTTTTTGTCCTGTATTGATT
TTTAGTTTGGGGTTTTGTTGTTTGTTTGTTTTTTGTTTGNTTNNTNTTTT
TTTTTTTNTNNNNNNNCNNCNNNNNCTNTNNNTNTTTTNTCTCCNNNNNN
CNNNNCCAACCCCCTTTTCCCTCCCCTTCGCCCCCCCCCCCCNCCCCCCG
CCGCCCACAGATTTTTTTTTCTCCCCCCCCTCCCTCCCCTTTTCTTTCTT
TTTTTTTTTTTTCTACTTTTTTTCCTCTTTCTACAATTTCATTCTTTTTC
TTATTCTTTTTTCTTCGCAATTTTTTTTTCCTTTTTTTTTTTTTTTTTTC
TTCTCGTTTTCTCCCCCCTCATTTCTTTTTATTTTTTTTTTATCATTATT
CCCTTCTTCCTTTTCTTACCTATCTTGTCTTTCTTTGTATTTATACAATT
CATCTACTGTTTTTTTTTCTTTCATCTTATAATCCCATCCCCTATTTTTC
TCTCCTTTTTTTTTCCCCGCCTTCTTCTTTCTCTTTTTTTCTCTTTTTTT
TTTTTTTTTTTTGATCTTTATCTTTTTTTTCTCTCTTTTTGTCCTATTTT
TTTTTTCTTTCTTTTTCTTTTTTACCTCTG

GGTTTTCGATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTAGCTTGGGCAAATT
GACAGTAGCATGCCTTAAAAGAAAATTAATCCAAAGGGGGGAAAAACTCT
TCAGGGATGGACTGTAAGACAGTGATAGAGATCTGACATAGGACAAGACC
CCAGGTTTCCCCCACACTGAAAACTACAGGAAAAAGAAGCTGCATCCTGA
TAGCATAGCTGGCTAGTACACACCTTGTAGGCAAGTACTTTCATGTTCGT
TGTCTCTGCTGGGTAGTTTTCTGTCAACTTGACACAAGCTAGAGTCACTG
GAGAGAAGAGAACCCTCAACTGAGAGGATGTCTCCATAAGACTGAGCTTT
AGGCAAGTTTGTAGAATGTTTTCTTAATTAGCGATTGATGTGAGAGTTCC
TGGTCCATTGTGAGTGGGGCCACCCTTGAGCTCATGGGCCTGGGTTCTCT
AAGAAAGAAGGCTGAGCAAGCCATGGAGAGCAAGCCAATAAGCAGCACTC
CTCCATGGGCTCTGTATCAGCTCTTGCATCCAGGTTCTCTGGCCTGTTTG
AGATTCTATTCTGACTTCCTTCAATGATGAATATTGGTGTGGTAGTGTTA
TCCTATTTCTCTTTTTCCTCCCCCGGTTGTGTTTTGCCCGCGATTTCTTC
TTCCGGTTAATAGTGTTCCTCCTGTAGGCATCTCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_g13.b1 MSMg01no406_g13.b1 CHROMAT_FILE:
MSMg01no406_g13.b1 PHD_FILE: MSMg01no406_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:42 2005
         (157 letters)



>mm_chr13_107816377_107816934
          Length = 558

 Score =  253 bits (131), Expect = 3e-72
 Identities = 152/159 (95%), Gaps = 3/159 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacctgctcttgttgcacccatgtgccactgtggttgacttattttgatgtcccccacca 60
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacctgctcttgttgcatctatgtgccactgtggttgacttattttgatgtcccccacca 260

                                                                       
Query: 61  aatctttcatatggtatttgaactaagcagagttaatca-tctttttgtcctgtattgat 119
           |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| |
Sbjct: 261 aatctttcatatggtatttgaactaagccgagttaa-caatctttttgtcctgtattggt 319

                                                  
Query: 120 ttttagtttggggttttgttgtttgtttgttt-tttgtt 157
           |||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 ttttagtttggggttttgttgtttgtttgtttgtttgtt 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 558
Length adjustment: 8
Effective length of query: 149
Effective length of database: 550
Effective search space:    81950
Effective search space used:    81950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no406_g13.g1 MSMg01no406_g13.g1 CHROMAT_FILE:
MSMg01no406_g13.g1 PHD_FILE: MSMg01no406_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:42 2005
         (433 letters)



>mm_chr13_107992586_107993418
          Length = 833

 Score =  801 bits (414), Expect = 0.0
 Identities = 423/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggctagcttgggcaaattgacagtagcatgccttaaaagaaaattaatccaaaggggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaggctagcttgggcaaattgacagtagcatgccttaaaagaaaattaatccaaaggggg 367

                                                                       
Query: 61  gaaaaactcttcagggatggactgtaagacagtgatagagatctgacataggacaagacc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaaactcttcagggatggactgtaagacagtgatagagatctgacataggacaagacc 307

                                                                       
Query: 121 ccaggtttcccccacactgaaaactacaggaaaaagaagctgcatcctgatagcatagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 306 ccaggtttcccccacactgaaaactacaggaaaaagaagctgcatcctgatagcataact 247

                                                                       
Query: 181 ggctagtacacaccttgtaggcaagtactttcatgttcgttgtctctgctgggtagtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggctagtacacaccttgtaggcaagtactttcatgttcgttgtctctgctgggtagtttt 187

                                                                       
Query: 241 ctgtcaacttgacacaagctagagtcactggagagaagagaaccctcaactgagaggatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ctgtcaacttgacacaagctagagtcactggagagaagagaaccctcaactgagaggatg 127

                                                                       
Query: 301 tctccataagactgagctttaggcaagtttgtagaatgttttcttaattagcgattgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tctccataagactgagctttaggcaagtttgtagaatgttttcttaattagcgattgatg 67

                                                                       
Query: 361 tgagagttcctggtccattgtgagtggggccacccttgagctcatgggcctgggttctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 66  tgagagttcctggtccattgtgagtggggccacccttgagctcatggccctgggttctct 7

                 
Query: 421 aagaaa 426
           ||||||
Sbjct: 6   aagaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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