BAC Information

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BAC

Clone NameMSMg01-406O09
Chromosome13 (Build37)
Map Location 47,109,090 - 47,109,323
singlet/doubletsinglet
Overlap geneNhlrc1
Upstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928
Downstream geneTpmt, Aof1, Dek, LOC100039761, Ibrdc2, 4931429P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406O09.T7 (MSMg01no406_o09.b1)MSMg01-406O09.TJ (MSMg01no406_o09.g1)
ACCAG504985AG504986
length727734
length of high quality
(start - end)
---235 (78 - 312)
definitionCHROMAT_FILE: MSMg01no406_o09.b1 PHD_FILE: MSMg01no406_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:22 2005CHROMAT_FILE: MSMg01no406_o09.g1 PHD_FILE: MSMg01no406_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCAATACCAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
GCNGCNGNGNAANCNCATTTTCCCAACATCAGGAGAAAAAAAAAAAAGAG
CNAAAGGAGAANANCACNNNCACCTGCCCCAGAGAAGCCGCNANGAGAGC
CAACGCNGNGNGGNANCGGAAGGCNNCACGACCAACNGGGCCACANCCCC
AGCGACAGCGACCGCCANAGAAGCGGGGGGCCCGGCCCAAGGCNCCNAAC
CATGTTGAGAACACCANCCACGGAACACAACACCCGAGAGACANCGGNGA
AAAGAAAGGAAGCCGCCTGTTTTTTTTTTGGACCTCGCGCGCACCTCTGA
AATATCCTTAGCTAATGCTGCTCCCCATAAAGGCAGTTTGAAGAATCTCC
GACCACCACACGTGACTCGATGTATTTACGTTCACGGACATTTACCTAGT
TTATCTTGTTTAAAATAATAGCACAGGTGAGGGCTCATTACTGTTCATGT
GAACTCAGGAAAGTGCTCTCTCATTTCCAGGCTCTGAGAACCCCCCCAAG
CCCCCACTGAATATACTGCTCCACTTACCCATGCTGACATCTGCTTTATC
TGATCCTTCTTTAACCTTGGATTCTTCCCACGACACAACTTATTTTTTTT
CTTATCCGCGCCATCCACACTCCCTCTCTTCTTTTTATCTCAACTTCTTC
ATATACGCCCCTTTTTTTGTCCCTCCN
NNNTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGGTTTCCCCAAGCAGACGA
TGGCTGGACCAGAGGTGTCAGCAACAATCACGTTTCCTTGGTGATCGAAG
GTCACAGCAGAGGCAGTTACTTTGGAGGGGAAGAGGAGGTTCAGCCCGAA
GCTATCCACCTGGCCAATCAGCTGCATAGTGGAGTTGAACACCTTCACCC
TTGTGTTGTTACAGCCAGTCCTCCCAAAGGCACAAGGATGCTCTAGGACC
GCGATGGCCCCGTTTTTTTTTGACACTGCCAACCCACGGGGACTGCATAG
GTGAGCTTGCTTCCTCTCAATCCTCCGAAGGACCCTTTCAGGTAAATCCG
TTTCTTGCAGGTGCTAAGTCTCTGCCTCTGCCTCAGTCATCAGTACTCCA
TTGTGAGGGTCGATCTCATCATTCCTAGGTATGCTACCTTGTTTTCCCCT
TATTCGCTTGTATTGTTTCTTGCATTTTTTATTTTTTGTGGTCTCCTTTT
CCTTCTTTCTTTTTTTTCCTCCCCCGCTTTACCACTTTGTTGTCCCTTCA
CCCCCTACCTTTTTTTTTCTTTCTTCTTTTCGCTTTTTTTCCCCTTTTCT
TTTTTTCCCGTTCTGTGAGTCTTTCCTCCTTTTCTTTGCTCTCTTTCCTC
GTCTTTTTTACTTCTCTCATATTCCCGACTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_o09.g1 MSMg01no406_o09.g1 CHROMAT_FILE:
MSMg01no406_o09.g1 PHD_FILE: MSMg01no406_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:22 2005
         (235 letters)



>mm_chr13_47108890_47109524
          Length = 635

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcgggtttccccaagcagacgatggctggaccagaggtgtcagcaacaatcacgtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgggtttccccaagcagacgatggctggaccagaggtgtcagcaacaatcacgtttcc 260

                                                                       
Query: 61  ttggtgatcgaaggtcacagcagaggcagttactttggaggggaagaggaggttcagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtgatcgaaggtcacagcagaggcagttactttggaggggaagaggaggttcagccc 320

                                                                       
Query: 121 gaagctatccacctggccaatcagctgcatagtggagttgaacaccttcacccttgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagctatccacctggccaatcagctgcatagtggagttgaacaccttcacccttgtgtt 380

                                                                 
Query: 181 gttacagccagtcctcccaaaggcacaaggatgctctaggaccgcgatggcccc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttacagccagtcctcccaaaggcacaaggatgctctaggaccgcgatggcccc 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)