MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-407F01
Chromosome	13 (Build37)
Map Location	53,862,278 - 53,862,963
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Auh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
Downstream gene	E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb
Link	Open Mouse BAC browser

Click to get alignment info.

name	Auh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11992 MGI:1338011
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nfil3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18030 MGI:109495
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ror2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26564 MGI:1347521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sptlc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268656 MGI:1099431
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040421 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040421
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	Msx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17702 MGI:97169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG432760 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432760 MGI:3643792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 134 ESTs, 5 Proteins

name	E130119H09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78550 MGI:1925800
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Drd1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13488 MGI:99578
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sfxn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14057 MGI:2137677
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hrh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15466 MGI:108482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040535 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Cplx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12890 MGI:104726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thoc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73666 MGI:1920916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040543 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	4732471D19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319719 MGI:2442599
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4833439L19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97820 MGI:1921162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arl10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56795 MGI:1930788
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D13Wsu177e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28126 MGI:107862
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Higd2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67044 MGI:1914294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cltb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74325 MGI:1921575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ubxd8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76577 MGI:1923827
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rn4.5s-ps3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19802 MGI:97944
definition	note : 4.5s RNA, pseudogene 3 pseudo : _no_value

name	Rnf44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105239 MGI:2145310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC040758 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268663 MGI:2687323
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gprin1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26913 MGI:1349455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sncb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104069 MGI:1889011
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Auh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116268114 GeneID:11992 MGI:1338011
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AU RNA binding protein/enoyl-coenzyme A hydratase transcript_id : NM_016709.2

name	Nfil3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58331157 GeneID:18030 MGI:109495
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor, interleukin 3, regulated transcript_id : NM_017373.3

name	Ror2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47271532 GeneID:26564 MGI:1347521
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : receptor tyrosine kinase-like orphan receptor 2 transcript_id : NM_013846.3

name	Sptlc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:29244576 GeneID:268656 MGI:1099431
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine palmitoyltransferase, long chain base subunit 1 transcript_id : NM_009269.2

name	LOC100040421 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264235 GeneID:100040421
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : similar to Ubtf protein transcript_id : XM_001474649.1

name	Msx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326503 GeneID:17702 MGI:97169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box, msh-like 2 transcript_id : NM_013601.2

name	EG432760 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395141 GeneID:432760 MGI:3643792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 134 ESTs, 5 Proteins product : predicted gene, EG432760 transcript_id : XM_484260.3

name	Drd1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366202 GeneID:13488 MGI:99578
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dopamine receptor D1A transcript_id : NM_010076.2

name	Sfxn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347274 GeneID:14057 MGI:2137677
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sideroflexin 1 transcript_id : NM_027324.3

name	Hrh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131131 GeneID:15466 MGI:108482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histamine receptor H 2 transcript_id : NM_001010973.2

name	Hrh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58331135 GeneID:15466 MGI:108482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histamine receptor H 2 transcript_id : NM_008286.2

name	LOC100040535 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264237 GeneID:100040535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040535 transcript_id : XM_001474874.1

name	Cplx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84370333 GeneID:12890 MGI:104726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complexin 2 transcript_id : NM_009946.2

name	Thoc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384623 GeneID:73666 MGI:1920916
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : THO complex 3 transcript_id : NM_028597.2

name	LOC100040543 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264242 GeneID:100040543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : similar to synapsin I transcript_id : XM_001474889.1

name	4732471D19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88196777 GeneID:319719 MGI:2442599
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4732471D19 gene transcript_id : NM_176987.3

name	4833439L19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384711 GeneID:97820 MGI:1921162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4833439L19 gene transcript_id : NM_133797.2

name	Arl10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9910333 GeneID:56795 MGI:1930788
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosylation factor-like 10 transcript_id : NM_019968.1

name	D13Wsu177e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802676 GeneID:28126 MGI:107862
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 13, Wayne State University 177, expressed transcript_id : NM_178605.3

name	Higd2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382651 GeneID:67044 MGI:1914294
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HIG1 domain family, member 2A transcript_id : NM_025933.2

name	Cltb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351309 GeneID:74325 MGI:1921575
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clathrin, light polypeptide (Lcb) transcript_id : NM_028870.2

name	Ubxd8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341590 GeneID:76577 MGI:1923827
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UBX domain containing 8 transcript_id : NM_178397.2

name	Rnf44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527279 GeneID:105239 MGI:2145310
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 44 transcript_id : NM_134064.1

name	BC040758 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372214 GeneID:268663 MGI:2687323
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC040758 transcript_id : NM_001033364.2

name	Gprin1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803046 GeneID:26913 MGI:1349455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-regulated inducer of neurite outgrowth 1 transcript_id : NM_012014.3

name	Sncb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20589946 GeneID:104069 MGI:1889011
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synuclein, beta transcript_id : NM_033610.2

name	Auh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116268115 CCDS:CCDS26518.1 GeneID:11992 MGI:1338011
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004300 - enoyl-CoA hydratase activity [Evidence IDA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0004490 - methylglutaconyl-CoA hydratase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IDA] GO_process : GO:0009083 - branched chain family amino acid catabolism [Evidence IEA]; GO:0000288 - mRNA catabolism, deadenylation-dependent decay [Evidence TAS] codon_start : 1 product : AU RNA-binding enoyl-coenzyme A hydratase protein_id : NP_057918.2

name	Nfil3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8393832 CCDS:CCDS26519.1 GeneID:18030 MGI:109495
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] codon_start : 1 product : nuclear factor, interleukin 3, regulated protein_id : NP_059069.1

name	Ror2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47271533 CCDS:CCDS26520.1 GeneID:26564 MGI:1347521
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence TAS] GO_process : GO:0001502 - cartilage condensation [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030538 - embryonic genitalia morphogenesis [Evidence IMP]; GO:0007223 - frizzled-2 signaling pathway [Evidence IPI]; GO:0007254 - JNK cascade [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0001756 - somitogenesis [Evidence IMP] codon_start : 1 exception : mismatches in translation note : neurotrophic tyrosine kinase, receptor related 2 product : receptor tyrosine kinase-like orphan receptor 2 protein_id : NP_038874.3

name	Sptlc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244577 CCDS:CCDS26521.1 GeneID:268656 MGI:1099431
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0004758 - serine C-palmitoyltransferase activity [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016769 - transferase activity, transferring nitrogenous groups [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : serine palmitoyltransferase subunit 1 protein_id : NP_033295.2

name	LOC100040421 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264236 GeneID:100040421
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474699.1

name	Msx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326504 CCDS:CCDS26522.1 GeneID:17702 MGI:97169
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : homeo box, msh-like 2 protein_id : NP_038629.2

name	EG432760 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51767685 GeneID:432760 MGI:3643792
definition	codon_start : 1 product : similar to Sm D2 protein_id : XP_484260.1

name	Drd1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859542 CCDS:CCDS26524.1 GeneID:13488 MGI:99578
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0001590 - dopamine D1 receptor activity [Evidence IDA] [Evidence IMP]; GO:0004952 - dopamine receptor activity [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IDA] [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007190 - adenylate cyclase activation [Evidence IDA]; GO:0007610 - behavior [Evidence IMP]; GO:0007191 - dopamine receptor, adenylate cyclase activating pathway [Evidence IDA] [Evidence IGI]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence IDA]; GO:0007626 - locomotory behavior [Evidence IMP]; GO:0007617 - mating behavior [Evidence IDA]; GO:0042493 - response to drug [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0019226 - transmission of nerve impulse [Evidence IMP] codon_start : 1 note : D1 receptor; D1A dopamine receptor; G protein-coupled receptor DRD1 product : dopamine receptor D1A protein_id : NP_034206.1

name	Sfxn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15147224 CCDS:CCDS26525.1 GeneID:14057 MGI:2137677
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008324 - cation transporter activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IEA]; GO:0030218 - erythrocyte differentiation [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0006826 - iron ion transport [Evidence TAS] [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : flexed tail product : sideroflexin 1 protein_id : NP_081600.1

name	Hrh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58331134 CCDS:CCDS26526.1 GeneID:15466 MGI:108482
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; histamine H2 receptor product : histamine receptor H 2 isoform 1 protein_id : NP_001010973.1

name	Hrh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58331136 GeneID:15466 MGI:108482
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; histamine H2 receptor product : histamine receptor H 2 isoform 2 protein_id : NP_032312.2

name	LOC100040535 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264238 GeneID:100040535
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474924.1

name	Cplx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753508 GeneID:12890 MGI:104726
definition	GO_function : GO:0019905 - syntaxin binding [Evidence IEA] GO_process : GO:0006887 - exocytosis [Evidence IEA]; GO:0043303 - mast cell degranulation [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0006904 - vesicle docking during exocytosis [Evidence ISS] codon_start : 1 product : complexin 2 protein_id : NP_034076.1

name	Thoc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312090 CCDS:CCDS26527.1 GeneID:73666 MGI:1920916
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : THO complex 3 protein_id : NP_082873.1

name	LOC100040543 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264243 GeneID:100040543
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474939.1

name	4732471D19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88196778 CCDS:CCDS26528.1 GeneID:319719 MGI:2442599
definition	codon_start : 1 product : hypothetical protein LOC319719 protein_id : NP_795961.2

name	4833439L19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527012 CCDS:CCDS26529.1 GeneID:97820 MGI:1921162
definition	codon_start : 1 product : hypothetical protein LOC97820 protein_id : NP_598558.1

name	Arl10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910334 CCDS:CCDS26530.1 GeneID:56795 MGI:1930788
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ADP-ribosylation factor-like membrane-associated product : ADP-ribosylation factor-like 10A protein_id : NP_064352.1

name	D13Wsu177e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519925 CCDS:CCDS26531.1 GeneID:28126 MGI:107862
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : hypothetical protein LOC28126 protein_id : NP_848720.1

name	Higd2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385426 CCDS:CCDS26532.1 GeneID:67044 MGI:1914294
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : HIG1 domain family, member 2A protein_id : NP_080209.1

name	Cltb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794164 CCDS:CCDS26533.1 GeneID:74325 MGI:1921575
definition	GO_component : GO:0030125 - clathrin vesicle coat [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006886 - intracellular protein transport [Evidence IEA] codon_start : 1 product : clathrin, light polypeptide (Lcb) protein_id : NP_083146.1

name	Ubxd8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30409970 GeneID:76577 MGI:1923827
definition	codon_start : 1 exception : unclassified translation discrepancy product : protein expressed in T-cells and eosinophils in atopic dermatitis protein_id : NP_848484.1

name	Rnf44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527280 GeneID:105239 MGI:2145310
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ring finger protein 44 protein_id : NP_598825.1

name	BC040758 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85662397 GeneID:268663 MGI:2687323
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 exception : mismatches in translation product : protocadherin LKC protein_id : NP_001028536.1

name	Gprin1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84000009 CCDS:CCDS26534.1 GeneID:26913 MGI:1349455
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0051219 - phosphoprotein binding [Evidence IDA] GO_process : GO:0031175 - neurite development [Evidence IDA] codon_start : 1 product : G protein-regulated inducer of neurite outgrowth 1 protein_id : NP_036144.2

name	Sncb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15809030 GeneID:104069 MGI:1889011
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA]; GO:0019717 - synaptosome [Evidence IDA] GO_process : GO:0042417 - dopamine metabolism [Evidence IGI] codon_start : 1 product : synuclein, beta protein_id : NP_291088.1

name	(CDS detail)
type	misc_feature
link
xref
definition	citation : [PUBMED 1373121] label : clone19 note : Terminal EcoRI-PstI fragment from 8 kb EcoRI genomic clone pseudo : _no_value

name	E130119H09Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94395144 GeneID:78550 MGI:1925800
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130119H09 gene transcript_id : XR_002314.1

clone name	MSMg01-501F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506F17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-351I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517J16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-435J13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-474P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072K24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-407F01.T7 (MSMg01no407_f01.b1)	MSMg01-407F01.TJ (MSMg01no407_f01.g1)
ACC	AG505303	AG505304
length	745	749
length of high quality (start - end)	690 (45 - 734)	517 (75 - 591)
definition	CHROMAT_FILE: MSMg01no407_f01.b1 PHD_FILE: MSMg01no407_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:55 2005	CHROMAT_FILE: MSMg01no407_f01.g1 PHD_FILE: MSMg01no407_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:55 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCTCAAAATTCATCACAGTGACACTCTTCCTCCAGCAATCCTAGAGTG TCCCTCCAAATACTGTCACCAACTGGGAAGCAAATATTCAAAAGCCCGAC CCTATTGGTGACATTTCTCCTTCAAACCACCACATCATACATTAGTATTT ACTATTTTGTTTTAGCTTTTACTATTGTTTTGTGAACTAAATTCATCCAC ATGTGTTAGGTTGGTTATTAAAATTGATGAAATCATGCAGTGGCTATTTT AAGGGATTTTTCAAGCCTGTGATGCATTTCATGAAAAACAACTGTAGTTT TCAAATACAGAACAACTAATGGTAAAGTGGCATTTTGAAATATTTGTTCA GATCTCACTCATCCCTGGGTTAGTAAGAGACAGGCTTGTGTCCACGGTCA CTTTTCATTTAATCTGTTGTGTTAAGGGTAAAGAGAAAAGCTTGTGTTAC ACATTTAGGAAGGGAGGGATCCATACTTTTTTGAGATGGTGTCTCATGCT CTGTAGCCACTAAAGGCCTTGAACTCCCAATGCCCCTCCAGTGTACAGAG TGTTGAGATGGAGAAAGAGAATTTTAACATCCCTTTCAGATTGTTTTTTG TGTATTCTTTGTTTTGCAGCATAAAATTGACAAACGGTTTTACATTCTAG GTTATAATCTTATCTCTGGGTTGTTTTCTGCGGTTATATAAAACT	ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT CAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA GGACACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT TATGGAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG AGGTAAAACATTCACAAAGGAACTCACACAATATGTACTCCCTGATCAGG GGATATTAGCCCAAAACCTAGGATACCCCAGGGATAAGATACAATTTTCT AAAACCATGAAACTCCCGAAAATGAGGACTGGAGTGGGGACCCTTATGC
quality values	Open. Hide. 6 6 6 6 13 15 37 41 37 33 32 30 28 28 37 37 29 30 31 31 31 31 50 50 27 25 17 14 14 21 27 12 12 11 11 11 15 23 32 33 33 33 33 36 36 59 57 57 36 36 36 31 33 33 33 33 19 19 11 16 11 11 11 11 17 23 34 37 37 31 31 36 36 36 36 47 47 59 59 57 57 57 47 47 47 47 48 48 59 59 54 57 59 59 59 59 59 57 57 57 57 48 48 48 48 48 41 41 57 48 57 54 57 57 57 47 47 47 47 47 47 57 57 57 57 57 57 57 57 57 57 54 57 57 68 57 57 57 41 41 57 57 59 57 57 54 57 57 59 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 57 54 54 54 57 50 50 43 43 57 57 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 57 57 59 59 57 57 57 68 68 68 68 68 68 57 59 57 57 57 59 59 68 68 57 57 57 57 59 59 59 68 68 68 68 68 68 57 62 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 52 52 52 62 62 62 52 62 62 62 62 62 62 62 62 68 68 68 68 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 68 62 62 68 68 68 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 62 62 57 57 57 57 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 59 57 52 52 57 57 57 57 57 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 59 59 59 59 59 57 54 54 54 57 57 57 54 54 57 59 59 59 57 57 54 54 57 57 68 59 59 54 48 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 59 59 59 59 59 59 59 68 68 57 57 57 48 48 48 48 59 59 59 57 54 54 59 59 59 59 59 59 59 57 57 48 48 48 48 48 48 57 59 59 59 59 59 59 59 59 41 41 41 41 37 37 43 59 47 39 41 41 41 48 48 59 48 43 43 41 37 43 43 36 43 40 43 43 39 39 42 43 48 48 48 48 57 54 54 48 48 48 42 42 39 39 48 48 48 48 48 48 48 43 43 37 40 37 57 59 57 48 48 48 48 48 47 43 37 40 40 43 41 41 41 41 34 36 39 41 41 43 43 46 41 41 41 41 29 29 37 37 37 37 37 46 46 48 48 48 48 43 39 39 28 28 23 23 23 14 14 17 34 34 31 31 14 14 14 18 18 30 25 35 35 30 34 23 20 20 34 30 28 24 20 31 29 16 9 9 9 9 9 18 34 30 30 23 18 18 30 28 24 18 24 24 34 30 39 36 36 36 39 36 36 32 32 24 20 17 21 21 22 26 30 35 31 31 36 37 30 30 30 36 21 28 22 14 14 11 11 11 25 22 31 31 18 15 12 16 17 12 15 15 16 22 11 13 16 10 9 9	Open. Hide. 6 6 6 8 6 6 8 15 15 30 28 37 35 29 29 41 39 39 41 41 37 37 39 39 37 44 44 32 30 15 12 11 15 11 16 25 24 28 28 28 28 35 37 53 50 50 47 42 43 43 42 42 43 57 57 50 43 32 32 14 20 26 26 30 33 41 47 47 41 47 42 42 48 48 54 54 54 47 47 48 57 57 68 48 48 48 48 46 46 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 47 47 57 57 57 57 57 68 50 50 50 50 50 50 50 50 57 57 57 57 50 54 52 57 50 50 50 50 50 52 52 52 50 50 68 50 50 50 57 57 57 57 57 57 57 52 52 57 59 57 57 57 57 52 52 57 57 57 57 57 57 57 57 57 57 52 52 57 57 52 52 57 57 57 57 52 57 52 52 52 57 52 57 57 57 57 57 57 59 57 57 57 57 57 57 59 57 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 68 62 62 62 62 52 62 62 62 62 62 62 62 68 62 62 45 62 62 62 62 39 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 57 57 57 57 57 57 57 57 59 59 57 57 57 52 52 52 52 57 57 59 59 54 54 54 59 59 59 59 57 57 52 52 59 59 57 57 57 57 57 57 57 57 52 52 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 59 59 59 59 54 57 54 57 57 57 57 57 59 57 52 52 50 57 57 59 59 59 59 48 50 57 59 59 68 68 68 68 68 68 57 57 57 57 47 47 47 47 57 48 54 54 57 59 59 68 59 59 57 57 46 44 33 37 30 44 44 59 40 47 43 43 42 37 28 23 41 36 43 59 57 57 54 54 54 54 57 57 57 48 43 40 43 43 43 57 59 59 59 37 37 33 41 30 30 28 30 23 28 26 30 28 40 39 39 39 37 36 37 39 39 39 41 47 47 47 34 24 21 14 24 30 37 37 41 41 36 41 43 43 41 30 31 31 31 31 31 48 59 59 59 48 42 41 37 37 37 37 32 29 24 32 31 28 18 14 14 14 30 30 29 29 32 36 33 37 32 29 29 30 29 29 32 29 29 37 28 28 15 13 14 18 18 19 28 25 24 20 18 14 21 18 14 16 16 34 25 37 25 25 14 15 10 10 11 17 22 34 30 34 29 20 19 12 11 11 10 13 12 17 15 20 12 15 11 12 11 18 18 16 16 19 19 10 10 8 8 8 8 8 8 8 10 12 8 8 8 8 9 9 13 11 15 12 12 15 11 8 10 8 9 9 13 13 15 13 11 12 20 24 18 15 11 12 11 8 10 8 8 8 8 10 8 10 14 27 10 10 14 10 9 9 9 8 8 8 8 9 9 10 10 10 10 9 7 7 8 9 9 16 16 11 11 11 9 9 11 9 10 10 8 8 8 8 8 9 17 17 17 17 10 10 11 11 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no407_f01.b1 MSMg01no407_f01.b1 CHROMAT_FILE:
MSMg01no407_f01.b1 PHD_FILE: MSMg01no407_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:55 2005
         (690 letters)



>mm_chr13_53862074_53863163
          Length = 1090

 Score = 1265 bits (654), Expect = 0.0
 Identities = 678/686 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaaaattcatcacagtgacactcttcctccagcaatcctagagtgtccctcca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaaatccatcacagtgacactcttcctccagcaatcctagagtgtccctcca 264

                                                                       
Query: 65  aatactgtcaccaactgggaagcaaatattcaaaagcccgaccctattggtgacatttct 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 aatactgtcaccaactgggaagcaaatattcaaaagcccaaccctattggtgacatttct 324

                                                                       
Query: 125 ccttcaaaccaccacatcatacattagtatttactattttgttttagcttttactattgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttcaaaccaccacatcatacattagtatttactattttgttttagcttttactattgt 384

                                                                       
Query: 185 tttgtgaactaaattcatccacatgtgttaggttggttattaaaattgatgaaatcatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgtgaactaaattcatccacatgtgttaggttggttattaaaattgatgaaatcatgc 444

                                                                       
Query: 245 agtggctattttaagggatttttcaagcctgtgatgcatttcatgaaaaacaactgtagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtggctattttaagggatttttcaagcctgtgatgcatttcatgaaaaacaactgtagt 504

                                                                       
Query: 305 tttcaaatacagaacaactaatggtaaagtggcattttgaaatatttgttcagatctcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcaaatacagaacaactaatggtaaagtggcattttgaaatatttgttcagatctcac 564

                                                                       
Query: 365 tcatccctgggttagtaagagacaggcttgtgtccacggtcacttttcatttaatctgtt 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatgcctgggttagtaagagacaggcttgtgtccacggtcacttttcatttaatctgtt 624

                                                                       
Query: 425 gtgttaagggtaaagagaaaagcttgtgttacacatttaggaagggagggatccatactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgttaagggtaaagagaaaagcttgtgttacacatttaggaagggagggatccatactt 684

                                                                       
Query: 485 ttttgagatggtgtctcatgctctgtagccactaaaggccttgaactcccaatgcccctc 544
           ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 ttttgagacagtgtctcatgctctgtagccactaaaggccttgaactcccagtgcccctc 744

                                                                       
Query: 545 cagtgtacagagtgttgagatggagaaagagaattttaacatccctttcagattgttttt 604
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 745 cagtgtacagagtgttgagatggagaaagagaattttaacagctctttcagattgttttt 804

                                                                       
Query: 605 tgtgtattctttgttttgcagcataaaattgacaaacggttttacattctaggttataat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtgtattctttgttttgcagcataaaattgacaaacggttttacattctaggttataat 864

                                     
Query: 665 cttatctctgggttgttttctgcggt 690
           ||||||||||||||||||||||||||
Sbjct: 865 cttatctctgggttgttttctgcggt 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information