Query= MSMg01no407_j09.b1 MSMg01no407_j09.b1 CHROMAT_FILE:
MSMg01no407_j09.b1 PHD_FILE: MSMg01no407_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:16 2005
(650 letters)
>mm_chr13_45516747_45517796
Length = 1050
Score = 1110 bits (574), Expect = 0.0
Identities = 628/648 (96%), Gaps = 7/648 (1%)
Strand = Plus / Minus
Query: 5 gaattctatttttttcttttcagaga-ttattgttgtggttagctttagttttttgagac 63
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 722 gaattctatttttttcttttcagagagtaattgttgtggttagctttagttttttgagac 663
Query: 64 agggtctcataaacactgggctgaccttcaactcactaggtagctgaggctagccttgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agggtctcataaacactgggctgaccttcaactcactaggtagctgaggctagccttgaa 603
Query: 124 cttacacttcctgcctagtactggataacaggtatgtacccccataccctgtcagagtta 183
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 602 cttactcttcctgcctagtactggataacaggtatgtacccccatgccctgtcagagtta 543
Query: 184 ttcttattccccactactttgtctttatcttttgaataaaagagtagttctctctgatgc 243
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tttttattccccactactttgtctttatcttttgaataaaagagtagttctctctgatgc 483
Query: 244 acacccgtagacgtcctaatttcagagttttcttcatagagaaatttgggttatcctccc 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acacccgtaaacgtcctaatttcagagttttcttcatagagaaatttgggttatcctccc 423
Query: 304 gggcctcaaatataattgacaagcacttccttagttctattttctgtttgtttgtttgtt 363
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 422 aggccgcaaatataattgacaagcacttccttagttctattttc----tgtttgtttgtt 367
Query: 364 ttgacaatgggtatctcacagcccagtgtagttccaacttcatttcttagccgaggatgg 423
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttgacaatgggtatctcatagcccagtgtagttccaacttcatttcttagccgaggatgg 307
Query: 424 gcttcgacttctgattctgctgtctccatctcttgggtactgggattacaggtgcatgcc 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcttcaacttctgattctgctgtctccatctcttgggtactgggattacaggtgcatgcc 247
Query: 484 aggactccatgcataccaagcaagcaaactaccaagtgagccaaggcctaagcctcacag 543
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 246 aggactccatgcataccaagcaagcaaactaccaagtgagccaaggcctaagtctcacag 187
Query: 544 tttattatatatgcaagtgctcactgtgcaagccatgggtcttttctcaatgtctgtaga 603
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 186 tttattatatatgtaagtgctcactgcgtaagccatgggtcttttctcaatgtctgtaga 127
Query: 604 gagtttagctctcttttaaaaag-taacatattccgtgataggtttca 650
||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 126 gagtttagctctctttt-aaaagttaacatattccgtgataggtttca 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_j09.g1 MSMg01no407_j09.g1 CHROMAT_FILE:
MSMg01no407_j09.g1 PHD_FILE: MSMg01no407_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:16 2005
(467 letters)
>mm_chr13_45315831_45316697
Length = 867
Score = 874 bits (452), Expect = 0.0
Identities = 463/467 (99%)
Strand = Plus / Plus
Query: 1 catccatgtttctcaggtaaacatccttgagattgcatacaagagccaagaaagtggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccatgtttctcaggtaaacatccttgagattgcatacaagagccaagaaagtggtca 260
Query: 61 cagagggagggagaatagaaatgctagcccaagtcttggggtctctagtggaaaaggtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagggagggagaatagaaatgctagcccaagtcttggggtctctagtggaaaaggtcc 320
Query: 121 atggagaagagaagaagccataacgcttcctggaagtggtgggccatgaggtagaaatcc 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggagaagagaagaagccataaggcttcctggaagtggtgggccatgaggtagaaatcc 380
Query: 181 aggagactgtggaggctggatggacagaggaatctgtatgtctgttttgtaacagtctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagactgtggaggctggatggacagaggaatctgtatgtctgttttgtaacagtctgc 440
Query: 241 agaaatgagtagcaggccagcaaacactcgagaacaggcagggctgagaatccattgcta 300
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaatgaatagcaggccagtaaacactcgagaacaggcagggctgagaatccattgcta 500
Query: 301 tcctgggtctctgagagcttagggcagagatgttgttacgttcagacgaggagcatctag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctgggtctctgagagcttagggcagagatgttgttacgttcagacgaggagcatctag 560
Query: 361 gtggaagctgcttatgaatttatactttgaccttttctaatcaggtcgtacctggggcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggaagctgcttatgaatttatactttgaccttttctaatcaggtcgtacctggggcta 620
Query: 421 gcaggctatgtgcatgcnaggaagtatatatcagaaaccaggcacat 467
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 gcaggctatgtgcatgcaaggaagtatatatcagaaaccaggcacat 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
