BAC Information

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BAC

Clone NameMSMg01-409F16
Chromosome13 (Build37)
Map Location 97,250,772 - 97,251,186
singlet/doubletsinglet
Overlap genePolk
Upstream geneF2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik
Downstream geneCol4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409F16.T7 (MSMg01no409_f16.b1)MSMg01-409F16.TJ (MSMg01no409_f16.g1)
ACCAG506859AG506860
length795784
length of high quality
(start - end)		472 (48 - 519)420 (75 - 494)
definitionCHROMAT_FILE: MSMg01no409_f16.b1 PHD_FILE: MSMg01no409_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:41 2005CHROMAT_FILE: MSMg01no409_f16.g1 PHD_FILE: MSMg01no409_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAATGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGGCTTCCATTCTATTCCCTTG
GGCTACTTGTCTTGGCCCATACCAAAACCTTGAGTTTATATACCAACTGC
CCGGATTAAAAGATATATCTTCTCATTGGTGTTTCTTGCTATAACCTTTT
TATCTCGCACAATTTTTGCATTTCCTAGCCTTTGGTTTTTCCCCCAAATT
CTTACTATTTCCTTTCCCCTCTTTTACTCCGTTTTCTCGTCTTTA

TTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCCGAGCGTGGTGGCGCACGCCTTT
AATCCCAGCACTGGGAGGCAGAGGCAGGTGGATCTCTGAATCTGAGGACA
ACCTGGTCTACAGAGTGAGTTCCAAAAAGAACAGCCTGGACCACACAGAG
AAACCCTACTTCAAAACACAAAAAAGGAAAAAAAAAAAACCCTGAATATT
TTTTATAGTCTTGCCTTTGCTTATTTTAATGCATTTATTATAGACAGAGA
GATATTTGATGGTCCTTAGAACCGATCTTGTATGGCACAGTCTTAACCTG
ACTTTTAATTGCTAGACTGCTTAAAAAAAATGGGCTAAAAGCTCGCTGAC
ATTCCAGACCCTTACCTGATATTATACACCACAACAGTTCCAACTCTGTG
GTCCTTTGGTTATTGGTTGTGATTTACTTATGTAAACTATTTATAATATT
AAATTCATTGAAACTGATTTTTTGCATTGAAAAATAGATATTACTGTATT
ATTTTCTTTCCTCTGAAGTTTATTTTTGCTGATTTCAACTTAAGGAATAA
TTATTTTTCTTGCTTATGTTACTCTTTTTGACGTGTTTTTTTCATTTAAT
TTCACTAATTTTTTTACCTTATAATTTTTCTCTTCTAACTTTGTTTAATT
CTTTTCTTTTCTCCTGCGTTTTTTTTTTTCTTCTTTTTCTTTTTCCCCCT
TACACTTTCCTTGATCCTCATTCCTTCTTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_f16.g1 MSMg01no409_f16.g1 CHROMAT_FILE:
MSMg01no409_f16.g1 PHD_FILE: MSMg01no409_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:41 2005
         (420 letters)



>mm_chr13_97250417_97251235
          Length = 819

 Score =  716 bits (370), Expect = 0.0
 Identities = 403/418 (96%), Gaps = 9/418 (2%)
 Strand = Plus / Minus

                                                                       
Query: 9   gtggtggcgcacgcctttaatcccagcactgg------gaggcagaggcaggtggatctc 62
           ||||||| ||||||||||||||||||||||||      ||||||||||||||||||||||
Sbjct: 770 gtggtggtgcacgcctttaatcccagcactgggaggcagaggcagaggcaggtggatctc 711

                                                                       
Query: 63  tgaatctgaggacaacctggtctacagagtgagttccaaaaagaacagcctggaccacac 122
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 710 tgaatttgaggacaacctggtctacagagtgagttccagaaagaacagcctggaccacac 651

                                                                       
Query: 123 agagaaaccctacttcaaaacacaaaaaaggaaaaaaaaaaaaccctgaatattttttat 182
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 650 agagaaaccctacttcaaaacacaaaaaagg--aaaaaaaaaaccctgaatattttttat 593

                                                                       
Query: 183 agtcttgcctttgcttattttaatgcatttattatagacagagagatatttgatggtcct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agtcttgcctttgcttattttaatgcatttattatagacagagagatatttgatggtcct 533

                                                                       
Query: 243 tagaaccgatcttgtatggcacagtcttaacctgacttttaattgctagactgcttaaaa 302
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 532 tagaaccgaccttgtatggcacagtcttaacctgacttttaattgctagactgctt-aaa 474

                                                                       
Query: 303 aaaatgggctaaaagctcgctgacattccagacccttacctgatattatacaccacaaca 362
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 473 aaaatgggctaaaagctcgctgacacaccagacccttacctgatattatacaccacaaca 414

                                                                     
Query: 363 gttccaactctgtggtcctttggttattggttgtgatttacttatgtaaactatttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gttccaactctgtggtcctttggttattggttgtgatttacttatgtaaactatttat 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 819
Length adjustment: 9
Effective length of query: 411
Effective length of database: 810
Effective search space:   332910
Effective search space used:   332910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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