BAC Information

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BAC

Clone NameMSMg01-410N18
Chromosome13 (Build37)
Map Location 18,351,711 - 18,352,062
singlet/doubletsinglet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410N18.T7 (MSMg01no410_n18.b1)MSMg01-410N18.TJ (MSMg01no410_n18.g1)
ACCAG508010AG508011
length802608
length of high quality
(start - end)
352 (75 - 426)---
definitionCHROMAT_FILE: MSMg01no410_n18.b1 PHD_FILE: MSMg01no410_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:43 2005CHROMAT_FILE: MSMg01no410_n18.g1 PHD_FILE: MSMg01no410_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAGCCATTACCAATTTCCTCTTGGGATAAGTGTTTATTGGCTT
GAGGTATATCTAACTATAGAGGTAAATAGTCCTACCTTCCTCTCTGAGCA
AGGCATTTAAGGGCTCTGTTTCTCATTTTCCTTACTTAACAAGAGTGAGG
TTGGGTTTGATGTATTTCAAGGACTATATCAACACTGGTTCTTATACAGT
TCACAGAATGTGAGCAAACATATCCTCATTCTTAGGGGTGGGTGGGACTC
TTGATTATCATCATTCTCTTTTTTTTCTTTTCTTCTAGACATACTATTCC
TCTCCCTTTCCCTTACATCCCACTGCCCCCTCGCTTGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACTC
CCTTTCTTTTCCCTTTTCTTTTTTTCTTTTTTCTTTCCACCCGTTCGCGT
CTTTTTTTTTTTCTTTCTCCTTTCCTTTCTTTTCCTTTTCTCCCCTTCAC
TCCCGCTTCCTTCTCTCTTCCTTTCCCTTCTTCCCCGTCTTTCCCCTTCC
CTTTCTTTCCTTCCTATCTTCCTCTTTCGTTCCTTCTCATTCTCCGTTTC
TCCCTTTCCCTGGTCTCTTTCCTTTCTTCTTTTCCTCCTCCTTTCCTTCT
TTTTACCATTCTTTCTTTCCTCCCTCCCTCCCCGTTTCTCATTTCTTCTT
ATTATTTCTCACCTCCGTTCATCCCTTTATTCCTACTTCCGCTTTTCCCC
CA
AAATGGTAGCTGCGGCGCTGGCTCACATTAGGGACCAAAAGGATCGCGAT
TGCTCTATCCATGGCGAGAACTACTCATCTAGNAGCTACTTTTGAGGCAC
GTACTTGAATACATGCGAGAAAACAAAGGCCACACTACGGATTGAAAAAA
AGAACCAAATGAAATTGATTTTATTAATTTTCCTCCATTTTTGGGAAGGC
CCCCCCTTGGGGGAAATCCCCGGGGAAATTCCGGAACCCCCCCCCCCCCG
GGANNCCCAACAGGGGGGAAAAAAAAATCTTCCAAAAAAAGACCCCCCAC
GGGGCCTTTCCAAACAAGGGGGGAAAAAAAAACCCTTTCCTTTTTTTTTT
TCCCCCCCCCCCCCCCCCCAAAAAAAAANAACAAATTCCAACCTACCCCC
TCCCTCTTTCTTTCCCCCCCCCCCCCCCCCTTTCTTTTCCCCCCCCCCCT
TCCCCTCCCTCCCCCTCCCCCCCCCTCTCCTCACCCCCCTCCCCCCCCCC
CCCTCCCNCNCCCCCCCCTCCCCACCCCAACACCCCCCCCCCCTCCTTCC
CTTCCTCTCTCCCCCTTCTTCCCCTCCCCTCCTTTACTCTTTTTGGTTGG
GGGGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_n18.b1 MSMg01no410_n18.b1 CHROMAT_FILE:
MSMg01no410_n18.b1 PHD_FILE: MSMg01no410_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:43 2005
         (352 letters)



>mm_chr13_18351619_18352370
          Length = 752

 Score =  619 bits (320), Expect = 0.0
 Identities = 343/360 (95%), Gaps = 16/360 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttgggataagtgtttattggcttgaggtatatctaactatagaggtaaatagtccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcttgggataagtgtttattggcttgaggtatatctaactatagaggtaaatagtccta 385

                                                                       
Query: 61  ccttcctctctgagcaaggcatttaagggctctgtttctcattttccttacttaacaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccttcctctctgagcaaggcatttaagggctctgtttctcattttccttacttaacaaga 325

                                                                       
Query: 121 gtgaggttgggtttgatgtatttcaaggactatatcaacactggttcttatacagttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgaggttgggtttgatgtatttcaaggactatatcaacactggttcttatacagttcac 265

                                                                       
Query: 181 agaatgtgagcaaacatatcctcattcttaggggtgggtgggactcttgattatcatcat 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaatgtgagcaaacataccctcattcttaggggtgggtgggactcttgattatcatcat 205

                                                                       
Query: 241 tct--------cttttttttcttttcttctagacatactattcctctccctttcccttac 292
           |||        |        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tctcaaaaacac--------cttttcttctagacatactattcctctccctttcccttac 153

                                                                       
Query: 293 atcccactgccccctcgcttgctctctctctctctctctctctctctctctctctctctc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atcccactgccccctcgcttgctctctctctctctctctctctctctctctctctctctc 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 17
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)