Query= MSMg01no411_c14.b1 MSMg01no411_c14.b1 CHROMAT_FILE:
MSMg01no411_c14.b1 PHD_FILE: MSMg01no411_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:07 2005
(486 letters)
>mm_chr13_45724901_45725786
Length = 886
Score = 884 bits (457), Expect = 0.0
Identities = 478/485 (98%)
Strand = Plus / Plus
Query: 1 aagctctccatatcaagatccaggtcagaaacttctatctctcagcctccagattaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagctctccatatcaagatccaggtcagaaacttctatctctcagcctccagattaggat 260
Query: 61 cactggtgagccttccagttctggattgtagttcattacagatatagtcaagttgacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactggtgagccttccagttctggattgtagttcattacagatatagtcaagttgacaac 320
Query: 121 cagagatagccactacagctatgtaagaggtcctttatttggaaatcctcctgcccctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagatagccactacagctatgtaagaggtcctttatttggaaatcctcctgcccctgc 380
Query: 181 acagtgagatagctttctctggggactctgttccttgattttatctttctaccaattttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtgagatagctttctctggggactctgttccttgattttatctttctaccaattttc 440
Query: 241 ctggttttttggctccatattgagaacaattaacggatgctaagctgtgtaagggtagtg 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtcagttggctccatattgagaacaattaacggatgctaagctgtgtaagggtagtg 500
Query: 301 gaggaggctgacattaatgaaggcttgggtcagaaggacccaaggctcaactcctgttcc 360
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 501 gaggaggctgacattaatgaaggcttgggtcagaagggctcaaggctcaactcctgttcc 560
Query: 361 ctggtctctctgtcatttgacaggagcctctaaaaaccctcctagctcactggccactgg 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ctggtctctctgtcatttgacaggagcctctaaaaaccctcctagctccctggccactgg 620
Query: 421 acctgcatctcctttactccttccccctttgcaagtgtgaagctgaccttactctgttat 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctgtatctcctttactccttccccctttgcaagtgtgaagctgaccttactctgttat 680
Query: 481 ttttt 485
|||||
Sbjct: 681 ttttt 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_c14.g1 MSMg01no411_c14.g1 CHROMAT_FILE:
MSMg01no411_c14.g1 PHD_FILE: MSMg01no411_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:07 2005
(506 letters)
>mm_chr13_45932398_45933303
Length = 906
Score = 919 bits (475), Expect = 0.0
Identities = 499/507 (98%), Gaps = 2/507 (0%)
Strand = Plus / Minus
Query: 1 ccccatctgactttcctctcagttcgagtcgggtatagcctggcaggctcccttaggaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 706 ccccatctgactttcctctcagttcgagtcgggtatagcctggcaggctcgcttaggaac 647
Query: 61 tgagcaaaatcgaactggctagctccttagcttgtcccacccctcctcaagaaaaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tgagcaaaatcgaactggctagctccttagcttgtcccacccctcctcaagaaaaattaa 587
Query: 121 tttcgttgctactgcgtgagacgatttctctgtctttcagcatggaaacttgaatgtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tttcgttgctactgcgtgagacgatttctctgtctttcagcatggaaacttgaatgtggg 527
Query: 181 ttctcctgctaggcagtcacttgttgctggtgactgatttgttgaagagttgctgatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttctcctgctaggcagtcacttgttgctggtgactgatttgttgaagagttgctgatttc 467
Query: 241 tattgtgcggaattggtttcttcctttttttcttttttccggagttccttaagttcctag 300
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 466 tagtgtgcggaattggtttcttcctttttttcttttttcctgagttccttaagttcctag 407
Query: 301 tctggtgtttggaagaaaagataatttaatgtaggctatttgttttattgcgttcaataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 406 tctggtgtttggaagaaaagataatttaatgtaggctatttgttttattgcgtccaataa 347
Query: 361 tcaaaaagtaacatttctggcaggggcaacactgggagaggaaatactttgaaagtataa 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tcaaaaagtaacatttccggcaggggcaacactgggagaggaaatactttgaaagtataa 287
Query: 421 acctgttttcaaaaagatgcg-atcaagcacttgcctgtaaaaaggtgcagaatgaatca 479
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acctgttttcaaaaagatg-gaatcaagcacttgcctgtaaaaaggtgcagaatgaatca 228
Query: 480 atggtggcatgtgtcagccaattaaag 506
||||||||||||||||||||||||||
Sbjct: 227 gtggtggcatgtgtcagccaattaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|