BAC Information

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BAC

Clone NameMSMg01-411I18
Chromosome13 (Build37)
Map Location 81,539,885 - 81,540,293
singlet/doubletsinglet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411I18.T7 (MSMg01no411_i18.b1)MSMg01-411I18.TJ (MSMg01no411_i18.g1)
ACCAG508531AG508532
length780784
length of high quality
(start - end)
517 (45 - 561)409 (77 - 485)
definitionCHROMAT_FILE: MSMg01no411_i18.b1 PHD_FILE: MSMg01no411_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:38 2005CHROMAT_FILE: MSMg01no411_i18.g1 PHD_FILE: MSMg01no411_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGTCTCACTGCTAAGCATTGTAAAAGCAATATACAGCAAACCAG
TAGCCAGCATCGAACTAAATGGAGAGAAACTTTAAGCAATCCCACTAAAA
TCAGGGACAAGACAAGGCTGCCCACTCTCTCCCTTATCTATTCAATATAG
TACCTGAAGTTCTAGCTAGAGCAATTGGACAACAAAGGGATATCAGGGGG
GATACAAATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGATT
TGATAGTATACTTAAGTGACCCCAAAAGTTTCCCCAGAGAAGTTCTACAG
CTCTTAAGCAACTTCAGCAAAGTAGCTGGATATAAAATTAACTCAGACAA
ATAAGTAGGCTTCTAATACTCAAAGGATGAGTGAGCTGAGATAGAAATTA
GGGAAACAATACCCATCACAATAGTCACAAACAATATAAAGTATCTTGGT
GTGACTCTAACCAAACAAGTGAAAGATCTGTACAACAAGAACTTTCAGTA
TCTGAAGAAAGAAATCGAAGAAGACCTCCGAAGATGGAAAGATCTCCCCT
GCCTATAGATTGGCAGGGCCAAAAATATAAAAAATGAACATCTTACCGGA
AGGCATCTTACGAATCAATGGCTTTCCCCCCCACATTCCTGGTTCAATTT
CTCTTTAAGTCCGATAGCACACATTTTCCCATCCTTTCGGCCTATTTTCC
CCCCTCTTTATCCATATCCTTTCTCTCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGACTGGCTAATTAGTTTATTG
CTGGTGGCTATGTAAAATGATATAACCATCTGAAAGATGTTAGTTTCTTA
AATAACTACACATGAATTATGCAGGTCCATGCAATTACTGTCTTGGCCAT
TTATTTCAATGAAAACTTGTTACACAGAAATCTCTACATGAATGTTTGTG
GTAGCTTATTATAATAAAACTGTCCATCAGTTGGCAAAAGGCTAAATGAG
CTGTGAACTCCTACTAAGTGTGTTAAGGAACAAGCCATCGAGACACATCA
GCCAGTGTAATCTCCTAATGATCATGTCAAAAAAAAAATCTCCAAAATTG
TAGGGTGAAAGATTCCATTCACATATGAAAGTCACAACATCATAAAAATG
CAGAACTTAATCGTCATTTATAACAATGAGGGACTGTCAGGCAGGAAACT
GAGTGATCATGAAAGTTACTGTAAAGGATTCTTAAGAAATGAAAATTGTT
TGTGACCCTGTCAGCGTTAATATCATTTTGCAAGGCGTTCGACCATACCG
TATCTTGATTATATAAAATCTCACTTAATACCCCCTTTTCTTCCTCCTTC
TTTATCTTATTCATTCTTTTTCCCTCCCTCCTGCATTTCTTTTTCTCCTA
ATCTACATCCCTATTGGTTTAATTATTCCCTTACCACATTTTCCCCCCCT
ATAATTTTTCCCCACTCCCCCTCATATCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_i18.g1 MSMg01no411_i18.g1 CHROMAT_FILE:
MSMg01no411_i18.g1 PHD_FILE: MSMg01no411_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:38 2005
         (409 letters)



>mm_chr13_81539489_81540297
          Length = 809

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagactggctaattagtttattgctggtggctatgtaaaatgatataaccatctgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agagactggctaattagtttattgctggtggctatgtaaaatgatataaccatctgaaag 746

                                                                       
Query: 61  atgttagtttcttaaataactacacatgaattatgcaggtccatgcaattactgtcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgttagtttcttaaataactacacatgaattatgcaggtccatgcaattactgtcttgg 686

                                                                       
Query: 121 ccatttatttcaatgaaaacttgttacacagaaatctctacatgaatgtttgtggtagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccatttatttcaatgaaaacttgttacacagaaatctctacatgaatgtttgtggtagct 626

                                                                       
Query: 181 tattataataaaactgtccatcagttggcaaaaggctaaatgagctgtgaactcctacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattataataaaactgtccatcagttggcaaaaggctaaatgagctgtgaactcctacta 566

                                                                       
Query: 241 agtgtgttaaggaacaagccatcgagacacatcagccagtgtaatctcctaatgatcatg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtgtggtaaggaacaagccatcgagacacatcagccagtgtaatctcctaatgatcatg 506

                                                                       
Query: 301 tcaaaaaaaaaatctccaaaattgtagggtgaaagattccattcacatatgaaagtcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaaaaaaaaaatctccaaaattgtagggtgaaagattccattcacatatgaaagtcaca 446

                                                            
Query: 361 acatcataaaaatgcagaacttaatcgtcatttataacaatgagggact 409
           |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 acatcataaaaatgcagaacttaatcgtcatttagaacaatgagggact 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)