BAC Information

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BAC

Clone NameMSMg01-412N22
Chromosome13 (Build37)
Map Location 70,619,563 - 70,620,040
singlet/doubletsinglet
Overlap genenone
Upstream genePols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
Downstream geneBC018507, EG620473, Adamts16, 8030423J24Rik, LOC627230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412N22.T7 (MSMg01no412_n22.b1)MSMg01-412N22.TJ (MSMg01no412_n22.g1)
ACCAG509538AG509539
length788780
length of high quality
(start - end)		481 (64 - 544)445 (74 - 518)
definitionCHROMAT_FILE: MSMg01no412_n22.b1 PHD_FILE: MSMg01no412_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:22 2005CHROMAT_FILE: MSMg01no412_n22.g1 PHD_FILE: MSMg01no412_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCXXXXXXXXXXX
XXXXXXXXXXXXXCTCCGGTGGATGGGTTTAGATCTACCTCACAGGGGAA
TCCCTGTGTTCATCCTCCAGCCTAAAGGCTGATAAACACCTCCCTTATTG
GTATAAAATACTGCCATGACAAAGACTTGGTGCAGAGATACAACCCGATT
CCTAGTCATATCTTTACAGGATCATAAACACACACAGTGATAAAAGGTTC
TGCATTTCAGAGTCAGGAGGGGGAAGGATGCTCATATGGGGGAGTATAAA
GCCCATCAGACTCCCTGAGGAACTATAGGCAGTTCTTAGTTGTTAGAAGA
GAGGGACTCATTCCTCTGCCATGTGGCTACCTGTAAGTTGTCCCTACTTG
AGCAAATAACCCCTAACCCATACTCATGCAAGTAACTCGAATTAAAAGCA
GTGTTCCATGAACAAACAGACAAGAATACCTGANAATAGGAGAAACATAC
CTGGAGCACCATTGTCTGGCCACAGCTCTGCTGGCCTCTATCAGACCTGC
TGAACAAGGACATCCAAGTTAGATCCCTTCCCCCAGTTCCATTGGCTGTC
CCCCTGGGGAGTCTCAGCTGCCCTGAACTAACTGTAGGTTGGCCTGAATT
TCCCACTCTCAATTTTTTTTTGTCTGGGTTTTCCCCTTAAACCTTGGGAA
AAAAAAACATCCACGTCCTCTCCCCCCCAAAAAATTCTCAGGTTGGTCCT
TCCGAAGGCCGTTTTGCCCTGGCATTTATTCCCCATTA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATACAGTTGAATCCTTCTTAACAGTCT
GCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATG
AGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGGTTTCGG
CACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAAC
AAACCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCC
AGAGTGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTATTAAG
GAGAATTATCTTTCGCCTCGGACGTGTCACTCCCTCATTGGCTGCAGCCC
ATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGTACAAGTAGTCACAAAA
TACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTG
TCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACACTGTTA
GCACCCTCAGCCTGAGCCTTATTATTAATCTCCGCCCTCCTCCCCCCACG
GTGGGTGGGCAGACCCCTTATAACCCTGGAAATTGCCTTCTGGAAGGAAG
TGAATCCCTCCCCCCGCTTTGTTCGCCATTTAAGCTGAAATTGTTTTTGT
ATTAAGAAAATTTTTCCTTCCCCCTTTTGGGGAGAAAGGGGAAGAGCAAA
AAATTCTCTTTTACCCTCTCTGGCCATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_n22.b1 MSMg01no412_n22.b1 CHROMAT_FILE:
MSMg01no412_n22.b1 PHD_FILE: MSMg01no412_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:22 2005
         (481 letters)



>mm_chr13_70619359_70620240
          Length = 882

 Score =  903 bits (467), Expect = 0.0
 Identities = 475/478 (99%), Gaps = 1/478 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggtggatgggtttagatctacctcacaggggaatccctgtgttcatcctccagcctaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggtggatgggtttagatctacctcacaggggaatccctgtgttcatcctccagcctaaag 264

                                                                       
Query: 65  gctgataaacacctcccttattggtataaaatactgccatgacaaagacttggtgcagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgataaacacctcccttattggtataaaatactgccatgacaaagacttggtgcagag 324

                                                                       
Query: 125 atacaacccgattcctagtcatatctttacaggatcataaacacacacagtgataaaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacaacccgattcctagtcatatctttacaggatcataaacacacacagtgataaaagg 384

                                                                       
Query: 185 ttctgcatttcagagtcaggaggggg-aaggatgctcatatgggggagtataaagcccat 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgcatttcagagtcaggaggggggaaggatgctcatatgggggagtataaagcccat 444

                                                                       
Query: 244 cagactccctgaggaactataggcagttcttagttgttagaagagagggactcattcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagactccctgaggaactataggcagttcttagttgttagaagagagggactcattcctc 504

                                                                       
Query: 304 tgccatgtggctacctgtaagttgtccctacttgagcaaataacccctaacccatactca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccatgtggctacctgtaagttgtccctacttgagcaaataacccctaacccatactca 564

                                                                       
Query: 364 tgcaagtaactcgaattaaaagcagtgttccatgaacaaacagacaagaatacctganaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 tgcaagtaactcgaattaaaagcagtgttccatgaacaaacagacaagaatacctgaaaa 624

                                                                     
Query: 424 taggagaaacatacctggagcaccattgtctggccacagctctgctggcctctatcag 481
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taggagaaacatgcctggagcaccattgtctggccacagctctgctggcctctatcag 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space:   410712
Effective search space used:   410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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