BAC Information

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BAC

Clone NameMSMg01-413D16
Chromosome13 (Build37)
Map Location 51,976,717 - 51,976,962
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413D16.T7 (MSMg01no413_d16.b1)MSMg01-413D16.TJ (MSMg01no413_d16.g1)
ACCAG509812AG509813
length730737
length of high quality
(start - end)
499 (64 - 562)246 (64 - 309)
definitionCHROMAT_FILE: MSMg01no413_d16.b1 PHD_FILE: MSMg01no413_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:51 2005CHROMAT_FILE: MSMg01no413_d16.g1 PHD_FILE: MSMg01no413_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGCT
TTGTCTCCACTGAATGATGGACTGCGCTCTGTAAATCAGATTAAAAACCC
CATCCTCCACCAACCAGCTTTTAGTCATTGTGTTATCACAGCAGCAGAAA
CTGAATGCGAATAGTCTCTCAGTGACCTCCACTCAATGAGTAGGCTGTAC
TGGTGGACCAGCAAGCTTCGGGGATCTTTCTGTCTCTCCCTTCCCAGTAG
TGGGACACAGCAGGTCCTGACACAGCTTGGCTTTCTTAACATGCATTGTA
GGGGTTGAATTCTTTTTCCTCTGTCTTGCAAGGGAGGTAATGGCTGTATC
TCTTGAAGCCCCGNGCTGGTTTTTTTTTTTTTTTTTTTCCTGGTTTGGTG
GATACTATGTCTCTTATGACCTAGGCTGCCCTTAAGCTTGATAAGTAAGC
AAGGATGGCCTTGAACTCCTGATCCTGCCGCCTCTGCCTCCCATTGGTAG
CCACACTGTCGGCTCTCATTCCCTTGGGAAACCCACCCAGCTGAGTGGTC
ACCTCAAACCACAGGGAGTGCCAAGCACTTCAGCATTAGCATAGATGAAA
GGCCTACGCTTAGAACAAGCACAGCGTATGGTCCAACAGAAAAGTGTGTT
TCTATTGGAGATTGTCACAGAGTATTGCCTTGTTCACAGAGTTGGTAAAG
TGGACCTCTCTTTTCCTATTTGGCCAGATG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTCCTGTTTAGTATCTCCCTCCCACTCAGAATCTCT
TCCTTTCTAGCCACATGTGACTCTGTGGGCCCACAGAGGGATTGGTCTCT
TCAGTGTGGAGGCTGGAACCTCAAGCTATAAGAAGGGAGAAGAGCTCCCT
GATATTAACCCAACCACGTGACCCCAGGACTCTTGCCAGGAGGTCAAAAT
GCAGGAAAAGGTGACTACAGCCTTCAGCACAAACTCTGCGGTCGGGGGTG
GGGCAGGTGTGTTTCATGAAGGGCTGCCTTCCATGGAAGGGCCTGCCTGC
AGCTGCTCTCTCATCCCAGGGCATGCCTTATCTCTAGTGTCCTGCTGTCT
GGGGTCACAGTGGCCACTGTCTCATAAGCCTAGCCACACAGGGACAGATT
CTGCTCCAATCATTTTTCATTGCGGTAGCACAGGCTCCTTTTCCGTCCCA
GGCCAGCCTTACTTTCTAAGCAGTCCTGTTGCCACAGCTGCCATCTTTTT
TAGGGTCTTGCAGGCAGCTTCACTTTTGGACCGACTGACCGTCCTCTCCC
TGTAGACTCGGGCAGAGACTTGGTTGTGAGGGGAAGCGAGTGGCTTTTTT
TTTTAATGTTTGGAACATCCCTTTGTCGGCCGAAAATTTTCCCGCTCGAC
TACTTCTCCCATAGCTGTTGCTTTCTCTCCCCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_d16.g1 MSMg01no413_d16.g1 CHROMAT_FILE:
MSMg01no413_d16.g1 PHD_FILE: MSMg01no413_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:51 2005
         (246 letters)



>mm_chr13_51976517_51977162
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctgtttagtatctccctcccactcagaatctcttcctttctagccacatgtgactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctgtttagtatctccctcccactcagaatctcttcctttctagccacatgtgactc 260

                                                                       
Query: 61  tgtgggcccacagagggattggtctcttcagtgtggaggctggaacctcaagctataaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgggcccacagagggattggtctcttcagtgtggaggctggaacctcaagctataaga 320

                                                                       
Query: 121 agggagaagagctccctgatattaacccaaccacgtgaccccaggactcttgccaggagg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggataagagctccctgatattaacccaaccacgtgaccccaggactcttgccaggagg 380

                                                                       
Query: 181 tcaaaatgcaggaaaaggtgactacagccttcagcacaaactctgcggtcgggggtgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaatgcaggaaaaggtgactacagccttcagcacaaactctgcggtcgggggtgggg 440

                 
Query: 241 caggtg 246
           ||||||
Sbjct: 441 caggtg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)