BAC Information

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BAC

Clone NameMSMg01-414C09
Chromosome13 (Build37)
Map Location 91,061,804 - 91,062,044
singlet/doubletsinglet
Overlap genenone
Upstream geneXrcc4, Tmem167, LOC100043170, LOC624190, EG435376
Downstream geneRps23, Atg10, LOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414C09.T7 (MSMg01no414_c09.b1)MSMg01-414C09.TJ (MSMg01no414_c09.g1)
ACCAG510513AG510514
length785773
length of high quality
(start - end)
248 (76 - 323)180 (371 - 550)
definitionCHROMAT_FILE: MSMg01no414_c09.b1 PHD_FILE: MSMg01no414_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:04 2005CHROMAT_FILE: MSMg01no414_c09.g1 PHD_FILE: MSMg01no414_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGAGTATGCCGCGG
AATTCACCTGCCTTTCAATCACAAGTGCTGGGATTAAAGGCATGCACCAC
CATGCCCAGCTGTAAAGTTCTGTACTGCCCAGGCTTTCAGAACCACTGCT
GCTTTTTTTTTTTTTTTAAATCTCTCAGTTCAATTGACAAGAGAACCACC
TTTCACTTCTGGAAGGCTGTATCCTATGCTAAATATAGGCTCCCAGCTCA
AATGTTTCCTACAGAGATACCTTCTTAAAGTCCACCCCTTCACTACAAAG
CTTCATTTTTCTATAACATTTTCCTGGTTGTAAAGATATTTTTTTATATT
TATAGGCTCTGTCCCTTTACCTACAATATAAACTTAGCGAGAAAAATCTT
CGTTCTCTTAACTGCCAAATATCCAGTGCAAATACATCAAATTTTTCATT
TTTATGTGACTCAACATCCCACATAAACTACGGGAATGATTCGGCTCGTA
AAGGCACTACATTTACTCAAGGACGCACAACCAACTACTGCCCGCTCACT
GTTTAAAGCTCACGTCTGGCTATTAACACCTACTAAACTATACTTCATCT
TTTTTCCCTGAATCATTGCCCCACCAACCTTAACACATTAACTGACGCTG
GACCCTCCTTTTTCTTTTCTTCCCTCCTCTCTGATTCTTCCACTTTCCCA
ACTTACCACCGCCCCGTACCTTGGTCACCGTTGCCCTCGGCCACGTCCTC
CCATCCCATAATACACCTCTTTCTTCACTACTTTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTCGCGTAAACAAGAGAACCTGCTTCTGTCTCCTAAGTCCT
GGGATTAAAGAAGCGTGTTGCCGTTCTTGGCTTAGTTTTTATTAACACAT
CAGTTGATTCAGTTAATGGACTCCTGTGTTTTTCATATATGTATACATAT
GCGTTGATTTTATTTAGTAACTGTTCTTATACCCCACCCCTTACCTTCCT
CATTTTTTTAACTTTTTAAATTAAATATATCTCACAAAATAAATTTTAAT
CAGTCTTTATCCTATACACTTACTCANTCACACACACACATGCATGCACA
CACAATCCTAAATTAAAATAATAAAACAGACCCCCCCCAAAAAAAAACAG
GACAAAATTATGAAATCAAAACAAAAGGTTCACAGAAAAATCCATGGAAT
TCATTTTGTGTTGAATAGTTGGTCCTAGGCATGGGGCCTGCCCTAAAGTA
TGCTTGAAATACCCAGTGACCCTCCATTGGAGAACACTGGTTTTCTTTCA
GGGAGTGGGGTTTTTGTGCCAACGTCCTCTTCTTAGGCTGAGATTTTGGG
TGACTTTACCTGTTTTTGACTTATTGCTGCTCTGATTATCTTTGCGTGTT
CACATGGATTATTTTTTTTTTTTTGTCTGAAACATATTTTTTCCTTTTCA
TTTTCCTACATCCTCTGTTTTTTTCATTTTTTCCTGCCATCTATTTTCAT
ATATTAATATCTTCACTTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_c09.b1 MSMg01no414_c09.b1 CHROMAT_FILE:
MSMg01no414_c09.b1 PHD_FILE: MSMg01no414_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:04 2005
         (248 letters)



>mm_chr13_91061604_91062246
          Length = 643

 Score =  406 bits (210), Expect = e-118
 Identities = 235/246 (95%), Gaps = 5/246 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgggattaaaggcatgcaccaccatgcccagctgtaaagttctgtactgcccaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tgctgggattaaaggcatgcaccaccatgcccagctgtaaagttctgtaatgcccaggct 260

                                                                       
Query: 61  ttcagaaccactgctgctttttttttttttttaaatctctcagttcaattgacaagagaa 120
           ||||||||||||| ||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 261 ttcagaaccactgttgcttttttttttt-----aatctctcagttcaattgacaagagaa 315

                                                                       
Query: 121 ccacctttcacttctggaaggctgtatcctatgctaaatataggctcccagctcaaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccacctttcacttctggaaggctgtatcctatgctaaatataggctcccagctcaaatgt 375

                                                                       
Query: 181 ttcctacagagataccttcttaaagtccaccccttcactacaaagcttcatttttctata 240
             ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 376 aacctacagggataccttcttaaagtccaccccttcactaaaaagcttcatttttctata 435

                 
Query: 241 acattt 246
           ||||||
Sbjct: 436 acattt 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 643
Length adjustment: 9
Effective length of query: 239
Effective length of database: 634
Effective search space:   151526
Effective search space used:   151526
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)