BAC Information

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BAC

Clone NameMSMg01-414C18
Chromosome13 (Build37)
Map Location 96,106,960 - 96,107,322
singlet/doubletsinglet
Overlap geneZbed3
Upstream geneENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
Downstream geneAggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414C18.T7 (MSMg01no414_c18.b1)MSMg01-414C18.TJ (MSMg01no414_c18.g1)
ACCAG510531AG510532
length775803
length of high quality
(start - end)		562 (46 - 607)411 (78 - 488)
definitionCHROMAT_FILE: MSMg01no414_c18.b1 PHD_FILE: MSMg01no414_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:06 2005CHROMAT_FILE: MSMg01no414_c18.g1 PHD_FILE: MSMg01no414_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAGAGATGGCAACAAGGTGAGCAACCTTTGAATACTTTTCTGG
GACTATTTTGCAGTGCTGCTGTGGAAAGCAGGGTCTACAACATTCTAGGC
AAGCGCTGAACAGCTTGCTAACCCTTTAGTCCCTCAGAAAATTAGAAAGA
AGGGTTAGACACCAGGTTAAAGTAACACTGATATATGAACTTACATGGTA
TGCTTTTTTTTCAATTATGGTCCTAAAAGTTTGCTTCTCTGAACCAATTC
CTTCTTCTCACTCATTGTAGAGATGGTTTCAGAAGAGGAGAGAACCATAC
AGGTGGTATAAGAGGCTATAAGGTCTCAGAAGTTCTCCTCCTGCTTCTCA
GAACATCTTTCCTGAAGACTGTGGAGGAACCCTGCAGTGCCACTATCGCC
AAGGCAACATAGAGAGAGGAATTGTTTTCGTCTCCTAATGATATGTTATT
AAACTCTTATATCTGAAGCGATTATATTTCAATAACAATATGAATTTTCA
ATATAATTGTCCCATGTGCCTTTTGATTTAGTATAATATATATTTATAAG
CTCTGTTTTTTCCATATTGTAACTTTTAAAATAGTTCCCGGTAAACACTT
ACCACTTAAAATTCAAGAACACCACTTTTGTTCATGTTCTTGGGCACGGG
TAATTCTGAAACACTCTACCTACCTTGATGTGCCAGCAGTATACCCCCTG
AAGAAAGGGGGTCCCTCCCATCAGG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACGGTGTTGAAGAACACTG
TAACATGTAGAGGCTTTAACCACATGAATGAGATAGGGGTTGACTCTAAG
GCAGTGGGGAGGTGCGGCCTCTGGTTTTTCTTTTGGTTCAGGGGGAGGTC
TGTGGGGACCTGTGGGGCAAGAAACTTCTCCCTAGTGGCCGATGTCTTGC
TAGTAAGGTGTCAAGATGCAAGACAAGGAAATGGGAGAATGTACTTGTCG
CTGGGTCTCATCCAGGCAAAGATGATTTATTTTTGCTCACTGCCTTGGGT
TAGCCACATGAGGGACAGGAACAAAAAGGGGTCTCTTTGGGACTGGTCCA
AGGTGGGGTTCTATAGATGCTGAAGGCAGGGAGCCAGGGAGTCAGTGATA
CTCAAGGTTCCTTTCTGGAACATGGTGGTGCCGAGTCAAGATTATACTTT
TGGAAAAGAGTGGACCAAGTTTTCTGGATAAAAACCATGCCTCTCCCCCC
CCCCCCAAAGGGCTCGTGGTGGGAAGAAGCTCCTGGGGTCTTAAATAAAA
ACCGGCGTGCGCCCACCTTGCTCCCGAAAAAAAACCCTTGAATATGTATT
CTTCTGGCCCAGCTTTTTCTGCGCTTGTTTTTTTTTTGTTTTTATCTATA
AGGGGGTATAACACTCCCCCCCACTCTTGGGGCTTCCCGCCTTCCTTTTT
AATTTTCTAGTCGCGCAACTATGTCTATTAGTGAATCCTTCACTCTCCCT
GTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_c18.g1 MSMg01no414_c18.g1 CHROMAT_FILE:
MSMg01no414_c18.g1 PHD_FILE: MSMg01no414_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:06 2005
         (411 letters)



>mm_chr13_96106712_96107522
          Length = 811

 Score =  640 bits (331), Expect = 0.0
 Identities = 355/367 (96%), Gaps = 8/367 (2%)
 Strand = Plus / Minus

                                                                       
Query: 49  gaatgagataggggttgactctaaggcagtggggaggtgcggcctctggtttttcttttg 108
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 611 gaatgagataggggttgactctaaggcagtggggaggcgcggcctctggtttttcttttg 552

                                                                       
Query: 109 gttcagggggaggtctgtggggacctgtggggcaagaaacttctccctagtggccgatgt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gttcagggggaggtctgtggggacctgtggggcaagaaacttctccctagtggccgatgt 492

                                                                       
Query: 169 cttgctagtaaggtgtcaagatgcaagacaaggaaatgggagaatgtacttgtcgctggg 228
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 491 cttgctagtaaggtggcaagatgcaagacaagaaaatgggagaatgtacttgtcgctggg 432

                                                                       
Query: 229 tctcatccaggcaaagatgattta----tttttgctcactgccttgggttagccacatga 284
           ||||||||||||||||||||||||        ||||||||||||||||||||||||||||
Sbjct: 431 tctcatccaggcaaagatgatttaaggg----tgctcactgccttgggttagccacatga 376

                                                                       
Query: 285 gggacaggaacaaaaaggggtctctttgggactggtccaaggtggggttctatagatgct 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gggacaggaacaaaaaggggtctctttgggactggtccaaggtggggttctatagatgct 316

                                                                       
Query: 345 gaaggcagggagccagggagtcagtgatactcaaggttcctttctggaacatggtggtgc 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaaggcagggagccagggagtcagtgatactcaaggttcctttctggaacatggtggtgc 256

                  
Query: 405 cgagtca 411
           | |||||
Sbjct: 255 caagtca 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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