Query= MSMg01no414_c19.b1 MSMg01no414_c19.b1 CHROMAT_FILE:
MSMg01no414_c19.b1 PHD_FILE: MSMg01no414_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:07 2005
(235 letters)
>mm_chr13_111027312_111027946
Length = 635
Score = 416 bits (215), Expect = e-121
Identities = 224/227 (98%)
Strand = Plus / Plus
Query: 5 gaattccatggatttacttattacttataattacttcctcacggtatgttggctcataca 64
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatggaagtaattattacttataattacttcctcacggtatgttggctcataca 264
Query: 65 ttttaatcaagtgctctctgtgacggcgattgccagcttcctagcatctgtggaataaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttaatcaagtgctctctgtgacggcgattgccagcttcctagcatctgtggaataaat 324
Query: 125 gtttatccaagcaggaattatacactgaagagatgccctggtcagtcttcctttctcatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttatccaagcaggaattatacactgaagagatgccctggtcagtcttcctttctcatt 384
Query: 185 ctctgcttgaggttattttcacggtgtaggtttgggggtgggggtgg 231
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctgcttgaggttattttcacggtgtaggtttgggggtgggggtgg 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no414_c19.g1 MSMg01no414_c19.g1 CHROMAT_FILE:
MSMg01no414_c19.g1 PHD_FILE: MSMg01no414_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:07 2005
(507 letters)
>mm_chr13_111219056_111219962
Length = 907
Score = 758 bits (392), Expect = 0.0
Identities = 463/508 (91%), Gaps = 38/508 (7%)
Strand = Plus / Minus
Query: 1 tttcccttgatcctcttgtgcatacagatgtacaacaaacatggagggaccttggngaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 794 tttcccttgatcctcttgtgcatacagatgtacaacaaacatggagggaccttgg-gaga 736
Query: 61 aaggccaaaaataaataaataaataaacaaacaaataaacaaacaaacaaataaataaat 120
|||||||||||||||||||||||| || ||
Sbjct: 735 aaggccaaaaataaataaataaat----------------------ac----------at 708
Query: 121 agaacatcacaaaaaaacgttaaacctgacattcttaatccactcagtccacactgagaa 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ---acatcac-aaaaaacgttaaacctgacattcttaatccactcagtccacactgagag 652
Query: 181 tactccctctccagatctcttgctttgtggaaaaataaatccccatcatataaatactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tactccctctccagatctcttgctttgtggaaaaataaatccccatcatataaatactgg 592
Query: 241 tgtgtgaacagttgttagactttatgttcattacagctgaaagcttccctaatggcgcag 300
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 591 tgtgtgaacagttgtcagactttatgttcattacagctgaaagcttccctaacggcgcag 532
Query: 301 cttaggtcccgcagggttgttttgagaacagaaaacttcaggaagg-gcaaaccgcaacc 359
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 531 cttaggtcccgcagggttgttttgagaacagaaagcttcaggaaggagcaaaccccaacc 472
Query: 360 acactgtatagtaattggaagggctgctcacatttttcttttaaaccataaactccatag 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 471 acactgtatagtaattggaagggctgctcacattttacttttaaaccataaactccatag 412
Query: 420 tactataaattcaagccatttaaacacaaccaatctagactatgcttgcatcaagtacag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tactataaattcaagccatttaaacacaaccaatctagactatgcttgcatcaagtacag 352
Query: 480 ttttcctcaccattacagatcttgacct 507
||||||||||||| ||||||||||||||
Sbjct: 351 ttttcctcaccatcacagatcttgacct 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
