BAC Information

Click to search

BAC

Clone NameMSMg01-415A04
Chromosome13 (Build37)
Map Location 16,899,852 - 16,900,279
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665157, Inhba, LOC625181, LOC665191
Downstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415A04.T7 (MSMg01no415_a04.b1)MSMg01-415A04.TJ (MSMg01no415_a04.g1)
ACCAG511170AG511171
length699722
length of high quality
(start - end)
525 (67 - 591)489 (73 - 561)
definitionCHROMAT_FILE: MSMg01no415_a04.b1 PHD_FILE: MSMg01no415_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:15 2005CHROMAT_FILE: MSMg01no415_a04.g1 PHD_FILE: MSMg01no415_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAGTATGCTCATTGGCTGATGATTACTTTTCATACTTGTTTCT
GCAAGTAGAAGTTTTGCTCTATTTTAAGAGAAATCTCCTGCATCAGGTTG
GTATTGACTGCAATGATAACTGTTTGTGGAATGGGTGACCTGAAGTTCAT
CATTTATTTCCATATCTCCCATTGCAGGATAATCATCATCCTTGGTATAT
TTCTGCCTTTGTCAGCATCGCAGTAATGCAAATAGCAATTTGTTAACATA
ACAACAAAAGAACATAAACTAAAACAAAAACAAACAAAACTAAATCAACC
AACCAACAAACAAACAGAAAGTCCACATTAGTATATGAATCACTCCAGCA
ATTATAGCAGGGGGAAAATTTTCTTTTCTAATTTTTCTTTTCCCCAAAAT
AGAATGCAACTAGACTGCTTTGTCATCTTATACAAAGATTATAGGGATCA
TAAAAACAGGGATGTATAGGCATGTGAACTCTGTTTTCAGGCTCTATGAT
TGCTATAGTCTCTGAAAATACCAAGATCCTCACAAAAGCTAACTATGAAG
TCTCTGAGACATCATCTCCCTGGGGTCAGAATCACGCGTAACTTTGAGCA
GTATCTCTAACCGAATCTTACTAACCCCCATGCGCAAAATCAGCATGAC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGAGTGGATGTGGAGAAAGAGGCACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCATAAAACTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGTCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCCTTAATAAACTCCTACAATATGTACTCACTGATAAGTTG
TATACTACCCTTTAGACCTAGGATACCCCAGATCTTCAGATTTCACTTTG
CTAATCCCACTGATTCTTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_a04.b1 MSMg01no415_a04.b1 CHROMAT_FILE:
MSMg01no415_a04.b1 PHD_FILE: MSMg01no415_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:15 2005
         (525 letters)



>mm_chr13_16899852_16900776
          Length = 925

 Score =  797 bits (412), Expect = 0.0
 Identities = 424/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   tggctgatgattacttttcatacttgtttctgcaagtagaagttttgctctattttaaga 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 428 tggctgatgattacttttcatacttgtttctgcaagtagaacttttgctctattttaaga 369

                                                                       
Query: 64  gaaatctcctgcatcaggttggtattgactgcaatgataactgtttgtggaatgggtgac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaaatctcctgcatcaggttggtattgactgcaatgataactgtttgtggaatgggtgac 309

                                                                       
Query: 124 ctgaagttcatcatttatttccatatctcccattgcaggataatcatcatccttggtata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctgaagttcatcatttatttccatatctcccattgcaggataatcatcatccttggtata 249

                                                                       
Query: 184 tttctgcctttgtcagcatcgcagtaatgcaaatagcaatttgttaacataacaacaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttctgcctttgtcagcatcgcagtaatgcaaatagcaatttgttaacataacaacaaaa 189

                                                                       
Query: 244 gaacataaactaaaacaaaaacaaacaaaactaaatcaaccaaccaacaaacaaacagaa 303
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gaacataaacaaaaagaaaaacaaacaaaactaaatcaaccaaccaacaaacaaacagaa 129

                                                                       
Query: 304 agtccacattagtatatgaatcactccagcaattatagcagggggaaaattttcttttct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 agtccacattagtatatgaatcactccagcaattatagcagggggaaaattttcttttct 69

                                                                       
Query: 364 aatttttcttttccccaaaatagaatgcaactagactgctttgtcatcttatacaaagat 423
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 68  aatttttcttttccccaaaatagaatgcaactagactgcttcgtcatcttatacaaagat 9

                   
Query: 424 tataggga 431
           ||||||||
Sbjct: 8   tataggga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)