Query= MSMg01no415_m02.b1 MSMg01no415_m02.b1 CHROMAT_FILE:
MSMg01no415_m02.b1 PHD_FILE: MSMg01no415_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:13 2005
(500 letters)
>mm_chr13_20131974_20132873
Length = 900
Score = 934 bits (483), Expect = 0.0
Identities = 494/499 (98%), Gaps = 3/499 (0%)
Strand = Plus / Plus
Query: 5 gaattccagttatcagcagtacatttatctacattacctttcacgtgtacgagggcaggt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagttataagcagtacatttatctacattacctttcacgtgtacgagggcaggt 264
Query: 65 ctccctctgatcattctccaagatgcccagtgatgactcacacctaggcaactaccaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctccctctgatcattctccaagatgcccagtgatgactcacacctaggcaactaccaaac 324
Query: 125 ttcattatacatcgtgtgtgtttcccttcatatgtacctgtgaaacatctgctaggacct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcattatacatcgtgtgtgtttcccttcatatgtacctgtgaaacatctgctaggacct 384
Query: 185 gggcatgctaagagatgaacagcctcaactaaagcaacacaacaaaatactgtaagaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggcatgctaagagatgaacagcctcaactaaagcaacacaacaaaatactgtaagaaag 444
Query: 245 tttctttagggctggtgagatggctcagtgggtaagagcacccgactgctcttccgaagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctttagggctggtgagatggctcagtgggtaagagcacccgactgctcttccgaagg 504
Query: 305 tccggagttcaaatcccagcaaccacatggtggctcacaaccatccgtaatgagatctga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccggagttcaaatcccagcaaccacatggtggctcacaaccatccgtaatgagatctga 564
Query: 365 ctccctcttctggagtgtctgaagacagctacagtgtacttacatataatcaataaataa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctccctcttctggagtgtctgaagacagctacagtgtacttacatataatcaataaataa 624
Query: 425 atctttaaaaaaaaaaa---gcttctttaagctttgtgaattgagccgggagtggtggca 481
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctttaaaaaaaaaaaaaagcttctttaagctttgtgaattgagccgggagtggtggca 684
Query: 482 catgtctttaatccctgca 500
|||| ||||||||||||||
Sbjct: 685 catgcctttaatccctgca 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_m02.g1 MSMg01no415_m02.g1 CHROMAT_FILE:
MSMg01no415_m02.g1 PHD_FILE: MSMg01no415_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:13 2005
(586 letters)
>mm_chr13_20317626_20318610
Length = 985
Score = 1087 bits (562), Expect = 0.0
Identities = 580/586 (98%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 1 agcatagcatgtgaacactgcctcttttctctggagatacacactgagtgctaggacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agcatagcatgtgaacactgcctcttttctctggagatacacactgagtgctaggacaag 726
Query: 61 ccttcacagctgtctgtcattcaaggggccttgaccctacatatacacgagtattattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccttcacagctgtctgtcattcaaggggccttgaccctacatatacacgagtattattaa 666
Query: 121 tgcagtgaatacggttttttataagcgaattcaattaggactggcattttccttaagaac 180
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 665 tgcagtgaatacggttttttataagctaattaaattaggactggcattttccttaagaac 606
Query: 181 ctaactaaagataatgaccagagaaaacatttattcagtagacttattcgttgccattga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 605 ctaactaaagataatgaccagagaaaacatttattcagtagacttattcgttgcca-tga 547
Query: 241 atgtgcctgcccaaatgaattagctaattgttattaaggacatctatttagtaaattaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atgtgcctgcccaaatgaattagctaattgttattaaggacatctatttagtaaattaaa 487
Query: 301 tgccttgttcatgaaaggtctgaaatgagatttcagtttcttactataaaaagatcctgc 360
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 486 tgccttgttcatgaaaggtctgaaatgagatttgagtttcttaccataaaaagatcctgc 427
Query: 361 taagcaaggtagtatgaatcagagaaacactgactaatctgaaaagaaaagatgctagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taagcaaggtagtatgaatcagagaaacactgactaatctgaaaagaaaagatgctagca 367
Query: 421 aaataggaagatttagataaaacagagtaaaagcctaggatgtccagatagctagctgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaataggaagatttagataaaacagagtaaaagcctaggatgtccagatagctagctgtc 307
Query: 481 cccacagaacctgagtcaacgtctttatctctttgatacttctttttattaatatatgcc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cccacagaacctgagtcaacgtctttatctctttgatacttctttttattaatatatgca 247
Query: 541 aaaggggaatttgattcacaaaatatttctatctttgcagaatgta 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaaggggaatttgattcacaaaatatttctatctttgcagaatgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
