Query= MSMg01no416_a10.b1 MSMg01no416_a10.b1 CHROMAT_FILE:
MSMg01no416_a10.b1 PHD_FILE: MSMg01no416_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:34 2005
(548 letters)
>mm_chr13_12099199_12100151
Length = 953
Score = 903 bits (467), Expect = 0.0
Identities = 523/545 (95%), Gaps = 9/545 (1%)
Strand = Plus / Minus
Query: 11 ggaattccatctatctggccacgggggatccatcatccatgctgggtgtaagtgctttaa 70
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 883 ggaattccatctatctggccacgggggatccatcatccatgctgggtgtaactgctttaa 824
Query: 71 gtcctgtctgtaacctccctcagattgttctgtgtgagtaaacctgttaaactcattggt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gtcctgtctgtaacctccctcagattgttctgtgtgagtaaacctgttaaactcattggt 764
Query: 131 tccccacagtgaactctggtggaagctgtatgttggtttgttgttgggaccttaggggta 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tccccacagtgaactctggtggaagctgtatgttggtttgttgttgggaccttaggggta 704
Query: 191 aaggagacattgtttaaggtatgatttaaggaattttaccctccgagtgtaagcatgaaa 250
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 703 aaggagacattgtttaaggtatgatttaaggaattttaccctctgagtataagcatgaaa 644
Query: 251 atggaaagactatgaaaggaaggtttagagggttgggagaggggcacaagaggaaaatgg 310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 643 atggaaagactatgaaaggaaggtttaaagggttgggagaggggcacaagaggaaaatgg 584
Query: 311 agtctatgtgtcatggaaacaaaatgggagactatttgtggcaggaaggagccagcaagg 370
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aatctatgtgtcatggaaacaaaatgggagactatttgtggcaggaaggagccagcaagg 524
Query: 371 gtggggagacagaatggggggcgtgaataaaagcaaggggcaatg-----tatgaaaatg 425
|||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 523 gtggggcgacagaatggggggcatgaataaaagcaaggggcaatgatatatatgaaaatg 464
Query: 426 tcctattataatgaaacccattgctttgtaatgctggctaaagttaataaaactactgag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcctattataatgaaacccattgctttgtaatgctggctaaagttaataaaactactgag 404
Query: 486 agaagccgggcgtggtggcgcaca--cctttgatcccagcacttgggaggcagaggcagg 543
||||||||||| |||||||| | | ||||| ||||||||||| || | |||||||||||
Sbjct: 403 agaagccgggcatggtggcg-a-atgcctttaatcccagcactcggtatgcagaggcagg 346
Query: 544 tggat 548
||||
Sbjct: 345 cggat 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 953
Length adjustment: 10
Effective length of query: 538
Effective length of database: 943
Effective search space: 507334
Effective search space used: 507334
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_a10.g1 MSMg01no416_a10.g1 CHROMAT_FILE:
MSMg01no416_a10.g1 PHD_FILE: MSMg01no416_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:34 2005
(509 letters)
>mm_chr13_11938114_11939022
Length = 909
Score = 946 bits (489), Expect = 0.0
Identities = 504/509 (99%)
Strand = Plus / Plus
Query: 1 cctataacgtgcctatgtgtgacaacaggttctcagcagcctgtagggctgagtgatgct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cctataacgtgcctatgtgtgacaacaggttctcagcagtctgtagggctgagtgatgct 260
Query: 61 gtcgacatgggatagacaatgagattcaggtaagaaactcatcaccgccacattcagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcgacatgggatagacaatgagattcaggtaagaaactcatcaccgccacattcagaca 320
Query: 121 atggctttgccgactttggttggaggtggtggcattatttgactgtctttccagaatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggctttgccgactttggttggaggtggtggcattatttgactgtctttccagaatgaa 380
Query: 181 ggttcctgaatagaaacctaggcagaggacctaggcagtaaaaagaattaaatatttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttcctgaatagaaacctaggcagaggacctaggcagtaaaaagaattaaatatttgat 440
Query: 241 attaaatatctttcccaacactgacagattgttagcagggactcggagggaaaacatcaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaatatcaaacccaacactgacagattgttagcagggactcggagggaaaacatcaa 500
Query: 301 aactacacaactgttggcaagatgcagcaagagcttgcaaagttagtctcagctggtgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactacacaactgttggcaagatgcagcaagagcttgcaaagttagtctcagctggtgag 560
Query: 361 gcccaaagttggcaatgctatgtgcctatctgcttatattcttctccactatctttcgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcccaaagttggcaatgctatgtgcctatctgcttatattcttctccactatctttcgct 620
Query: 421 gaggcagggtctcttgcctgaacccagagcttatcaactaaccagtctaattggtcagct 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gaggcagggtctcttgcctgaacccagagcttatcaactaaccagtctaactggtcagct 680
Query: 481 tacccagagattctcaccacctcccggga 509
|||||||||||||||||||||||||||||
Sbjct: 681 tacccagagattctcaccacctcccggga 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
