BAC Information

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BAC

Clone NameMSMg01-417A15
Chromosome13 (Build37)
Map Location 90,728,968 - 90,729,346
singlet/doubletsinglet
Overlap genenone
Upstream geneHapln1, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
Downstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417A15.T7 (MSMg01no417_a15.b1)MSMg01-417A15.TJ (MSMg01no417_a15.g1)
ACCAG512714AG512715
length756743
length of high quality
(start - end)
381 (73 - 453)623 (78 - 700)
definitionCHROMAT_FILE: MSMg01no417_a15.b1 PHD_FILE: MSMg01no417_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:48 2005CHROMAT_FILE: MSMg01no417_a15.g1 PHD_FILE: MSMg01no417_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXACTCGAAAGAGGATCCG
CGGAATTCTCAATTTCCAATGATTTCCTATCACTAAAAACCAAGATGGAG
TGGAAAGAGGCACTGAGCAAAGGTGTAACTACAAACAACTCTAGATTGAT
GTCAACAACTATTTTGAAATACAGTATTCATCCATCCATCCACTCATTTA
TTCTGCAACAATTTTTTGAGCACACATTTTATGTCAGGCAGTACAACAGG
GCCTTAATACAAAATGGTGGCTATGAGGAAAATGACCCTCAGTCTTTATT
TTAAAAGCAATAGGGACACTCTTTTCCACCCACCAAACTTTCTACTCAAA
ATTTATCCTGTGTATAAGAAATGGAATATAGCTGTCTCCCCAGAGGCTCT
ACCAGTGTCTGAAAAATACAGAGGTGGATGCTCTCAGTCATCTATTGGAT
GGAGCACAGGGTCCCCAGTGAAGGAGCTAGAGAAAGTACCCAAGGATCTG
AAGTGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACTAATCAGAGC
TCACAGGGACTATACCACCAACCAAAGAGTACACATGGAGGGACCCATGG
GCTCCAGCTGCATATTGTACACAGTAAGGCCCTTGTCATTTCCCCAATGT
TATGTATATGTCTTCTGGCTTCTGTTTTACACTGTATGCCTCTCCTGCAA
ATTGCAAGCCCAGGCCCAATTAAACGTTTAATGGCTCGCTCTTGTCCCAT
ACATCN
CCGATGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAGTTACTTAAGAATTTCT
CCAAAGTATTCACTGATTGTTCAAGTTCAGAAGATTAGATAAGCTTTGAT
GAAATAAATTTCTAATGTCACACTGTATTAACAGCTACAGATCTCAGCTC
TACTTAGACAGAACTAATGAGATTCTTCCCAAACTTTTAAGTGTTATGTG
TAATGCTAGTAAAGGAACAGACTTTGGAGGAATAGTAAACTTAGAATTTT
TATTAATTGTTCTTCCAACTTAGGCATGCAAATTTAGGATTATTTTATTA
GTATTTATTTGAGGAGTCACATATTCTGAAATATTAAATCAAAATCTTAG
CTCCTATTAATGTGGCTTTTTCTTATCAAATGTAATTGAGAAAATGCCTT
AGATCAAATATAAAAATCTCCTCTAACAAAACACTAGCAATTTTTATAAT
TATATGTTGAAATACTTAAGACTTTGATTAAAGAGCGGGAATATTGTTCA
GTCAGTAAAATGCTTACTTTGCATGCATGAGGACCTACATTTTTCCCCAG
TATACTTGAGAAAGTTGAGTAGAGTAGACTGTGTATTTAAACTCAGAGAT
CAGGAAAAAGGCAGAGACTGATCTCTAGGTTTTACTGGGTCAACCACAAA
TTCCAGGCCAAGGAGAGACTTTGTATTCTGGTTTGCTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_a15.b1 MSMg01no417_a15.b1 CHROMAT_FILE:
MSMg01no417_a15.b1 PHD_FILE: MSMg01no417_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:48 2005
         (381 letters)



>mm_chr13_90728914_90729694
          Length = 781

 Score =  681 bits (352), Expect = 0.0
 Identities = 373/384 (97%), Gaps = 8/384 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctatcactaaaaaccaagatggagtggaaagaggcactgagcaaaggtgtaactac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttcctatcactaaaaaccaagatggagtggaaagaggcactgagcaaaggtgtaactac 374

                                                                       
Query: 61  aaacaactctagattgatgtcaacaactattttgaaatacagtattcatccatccatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaacaactctagattgatgtcaacaactattttgaaatacagtattcatccatccatcca 314

                                                                       
Query: 121 ctcatttattctgcaacaattttttgagcacacattttatgtcaggcagtacaacagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctcatttattctgcaacaattttttgagcacacattttatgtcaggcagtacaacagggc 254

                                                                       
Query: 181 cttaatacaaaatggtggctatgaggaaaatgaccctcagtctttattttaaaagcaata 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cttaatacaaaatggtggctacgaggaaaatgaccctcagtctttattttaaaagcaata 194

                                                                       
Query: 241 gggacac---tcttttccacccaccaaactttctactcaaaatttatcctgtgtataaga 297
           |||||||    ||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gggacaccaacct-----acccaccaaactttctactcaaaatttatcctgtgtataaga 139

                                                                       
Query: 298 aatggaatatagctgtctccccagaggctctaccagtgtctgaaaaatacagaggtggat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aatggaatatagctgtctccccagaggctctaccagtgtctgaaaaatacagaggtggat 79

                                   
Query: 358 gctctcagtcatctattggatgga 381
           |||||||| |||||||||||||||
Sbjct: 78  gctctcagccatctattggatgga 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)