Query= MSMg01no417_b14.b1 MSMg01no417_b14.b1 CHROMAT_FILE:
MSMg01no417_b14.b1 PHD_FILE: MSMg01no417_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:52 2005
(559 letters)
>mm_chr13_45501780_45502739
Length = 960
Score = 1021 bits (528), Expect = 0.0
Identities = 549/556 (98%), Gaps = 1/556 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggtgagctttggacac-cagtgagatttggtctcacaaaacaccaagtaaaa 63
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 760 gaattccaggtgagctttggacacacagtgagatttggtctcacaaaacaccaagtaaaa 701
Query: 64 ttaaattcaatttaaaaagtatctggagtgtgttaaggcataagagctcagaacagagtc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttaaattcaatttaaaaagtatctggagtgtgttaaggcataagagctcagaacagagtc 641
Query: 124 tttctcagcagggagagatgtgtgccacagctccgggaaaggatacagcgttggcagaac 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 640 tttctcagcagggagagatgtgtgccacagctccgggaaaggatacagcattggcagaac 581
Query: 184 aggtctgacccttggggtcatgcagggaggcggcttggaaggaaatatggtgagagataa 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 580 aggtctgacccttggggtcatgcagggaggcggcttggaaggaaatacggtgagagataa 521
Query: 244 gcaggagagtctaagggaagtgaggcacgtgcaatcctgtgctgataagggctccactag 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gcaggagactctaagggaagtgaggcacgtgcaatcctgtgctgataagggctccactag 461
Query: 304 ctctgcaaatggaggtattcagagtagccattctctcctattctgtacaagacttgtgac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctctgcaaatggaggtattcagagtagccattctctcctattctgtacaagacttgtgac 401
Query: 364 tcaaggctaggggaagtcacagaaccccgccagccccccaaggatgctatgttgtggcct 423
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 400 tcaaggctaggggaagtcacagaaccctgccagccccccaaggatgctatgctgtggcct 341
Query: 424 aagcttaggagacacatggtggtacgcgcctgtagaatgcatgtgtttcggtgatggctc 483
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 340 aagcttaggagacacatggtggtacgcgcctatagaatgcatgtgtttcggtgatggctc 281
Query: 484 ggtagaggccgctggctgctctggtgctgatcatcttaaacaggagcacgatgctgttgc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggtagaggccgctggctgctctggtgctgatcatcttaaacaggagcacgatgctgttgc 221
Query: 544 cggactccttggtgac 559
||||||||||||||||
Sbjct: 220 cggactccttggtgac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space: 521550
Effective search space used: 521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_b14.g1 MSMg01no417_b14.g1 CHROMAT_FILE:
MSMg01no417_b14.g1 PHD_FILE: MSMg01no417_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:52 2005
(439 letters)
>mm_chr13_45361791_45362629
Length = 839
Score = 688 bits (356), Expect = 0.0
Identities = 401/440 (91%), Gaps = 38/440 (8%)
Strand = Plus / Plus
Query: 1 atatatctaacctacaaagaagcaaaacatagcttctttgccaggagtgacttaaagatg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 237 atatatctaacctacaaagaagcaaaacattgcttctttgccaggagtgacttaaagatg 296
Query: 61 ggtgcttggctctttcacacagtcagcatatttagctacacacacacacacacacacaca 120
|||||||||||||||||||||||||||||||||||||
Sbjct: 297 ggtgcttggctctttcacacagtcagcatatttagct----------------------- 333
Query: 121 cacacacacacacac-acacacacacacacacacctgcaaacactgggtgagactaccca 179
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 --------------ctacacacacacacacacacctgcaaacactgggtgagactaccca 379
Query: 180 caagggcagtgtgttaagcagtgcaatgtcccagaaacatttgcctggggaaccgaatgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caagggcagtgtgttaagcagtgcaatgtcccagaaacatttgcctggggaaccgaatgt 439
Query: 240 aaacccagtcaactctgacctatatatcttcttgcttcctcttcccctgagtttcccttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaacccagtcaactctgacctatatatcttcttgcttcctcttcccctgagtttcccttc 499
Query: 300 ctttgtgggagtcatcagaaactactgggaaggagtttagattcctggcttgctctcttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttgtgggagtcatcagaaactactgggaaggagtttagattcctggcttgctctcttg 559
Query: 360 tgtttaatttagtttttggttttgactaagaacaatggctctcagtctgcaacagggaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtttaatttagtttttggttttgactaagaacaatggctctcagtctgcaacagggaaa 619
Query: 420 gaaacttgcttggaaatttg 439
||||||||||||||||||||
Sbjct: 620 gaaacttgcttggaaatttg 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
