BAC Information

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BAC

Clone NameMSMg01-417E21
Chromosome13 (Build37)
Map Location 66,204,941 - 66,205,559
singlet/doubletsinglet
Overlap genenone
Upstream geneHiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434
Downstream geneLOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417E21.T7 (MSMg01no417_e21.b1)MSMg01-417E21.TJ (MSMg01no417_e21.g1)
ACCAG512917AG512918
length762780
length of high quality
(start - end)
619 (69 - 687)520 (80 - 599)
definitionCHROMAT_FILE: MSMg01no417_e21.b1 PHD_FILE: MSMg01no417_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:09 2005CHROMAT_FILE: MSMg01no417_e21.g1 PHD_FILE: MSMg01no417_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:09 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAAT
TCTAATCATTGCCAGGATATTCATTATGGAATGATGTTTTTTTTTGTCAT
GACAGGGTTTCTCTGTGTAACAGCCCAGCTCTCCTAGAACTTGCTTTGCA
GACCAGGCTGACCTCTAACTCACAGACATGCTTGCCTCTGCCTCCTGAGT
GCTGGGATAAAAGGCATGCACCACTATAACCCAGCTAGATAATCTTTTTA
GTCAGATGACAAACTAAGTCAGAAATTGTGGTAGGATGAATGGTGTGGGT
GCTGTGGTCCCAGGGTGGTTTCTGGTAGACAGTTAGGGAGGCTCCCATAC
AGCTCTGACCGTATGAGACATGGGCATGTCTGTGGCATATTGAGTGTCTT
AGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGG
GGAGGAAAGGGTTTATTCGGCTTACACTTCCATACTGCTGTTCATCACCA
AGGAAGTCAGGACTGGAACTCATGCAGGTCAGGAAGCAGGAGCTGATGCA
GAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCACCTGGCTTGCTCA
GCCTACTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATCTTCCCACC
CACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGTCTTACAGT
TGGATCTCATGGAGGCATTTCCTCAAGTGAAGCTCCTTTCTCTGTGATAC
TCCAGCTGTGTC
TGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACCTTCGGGAGAACAGTTT
GTGTCCTTGACGCTAAGCTACCTGTTCTCAGTTTTTACATTTGACCTTTG
GGCATCATGGTGCCCTGAGGGGACAAGAACAGGATAGGGAATCTGCGCAT
GCTCACTCGCCGGAGGCGGGTTTAAGTCGTGTGTCAAGTATTTTTCTTTT
TGGAAGAAATGAAGATTTTACTTAAACTTTAGAAGAGATGAGAAATAAAA
CCCACGTTTTCCTGGGGAGCCACGAGCGTGCGCTGCGGCCCCCGCCGAAC
TCCTCCCCGTTCCTCGCGCCAAACTGTGGTGGAGGGCAGGAAGCAGAAAC
CGCGTCACAGCTTTTTAAAAGATTATTATTATTGATAATTAATAATGTTC
AACCTCTGTCTCGCTGAAACCTGGAAATAAAGTTTCTTCCTCGGTTCGTA
AATGACTTACAGTGGCCACAGGGAGAAAACAAAGACCGAGGACCTCTCAG
AGGCCATGAAATGAATTTCTAACCTGGAGCCAGACTCTTGATCTTGAACA
GCGGAGGAGTCTAGCCTCGGCTCAGGATTGGAGTTCTCACCTGGAAATGG
GGCTATCTGGGAGGCACGTAATAAACAGACACAGACTGCTTTTTTTGTGT
GCAAGGGGACAGCGGGTTTTTTAAGGATTGAGTATCTTTTTCATCTGGAC
TCCACCCCAGATTGTTTCAAATTCAGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_e21.b1 MSMg01no417_e21.b1 CHROMAT_FILE:
MSMg01no417_e21.b1 PHD_FILE: MSMg01no417_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:09 2005
         (619 letters)



>mm_chr13_66204866_66205884
          Length = 1019

 Score = 1174 bits (607), Expect = 0.0
 Identities = 616/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcattatggaatgatgtttttttttgtcatgacagggtttctctgtgtaacagcccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 attcattatggaatgatgtttttttttgtcatgacagggtttctctgtgtaacagcccag 635

                                                                       
Query: 61  ctctcctagaacttgctttgcagaccaggctgacctctaactcacagacatgcttgcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ctctcctagaacttgctttgcagaccaggctgacctctaactcacagacatgcttgcctc 575

                                                                       
Query: 121 tgcctcctgagtgctgggataaaaggcatgcaccactataacccagctagataatctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgcctcctgagtgctgggataaaaggcatgcaccactataacccagctagataatctttt 515

                                                                       
Query: 181 tagtcagatgacaaactaagtcagaaattgtggtaggatgaatggtgtgggtgctgtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tagtcagatgacaaactaagtcagaaattgtggtaggatgaatggtgtgggtgctgtggt 455

                                                                       
Query: 241 cccagggtggtttctggtagacagttagggaggctcccatacagctctgaccgtatgaga 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cccagggtggggcctggtagacagttagggaggctcccatacagctctgaccgtatgaga 395

                                                                       
Query: 301 catgggcatgtctgtggcatattgagtgtcttagtcagggtttctattcctgcacaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 catgggcatgtctgtggcatattgagtgtcttagtcagggtttctattcctgcacaaaca 335

                                                                       
Query: 361 tcatgaccaagaagcaagttggggaggaaagggtttattcggcttacacttccatactgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcatgaccaagaagcaagttggggaggaaagggtttattcggcttacacttccatactgc 275

                                                                       
Query: 421 tgttcatcaccaaggaagtcaggactggaactcatgcaggtcaggaagcaggagctgatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgttcatcaccaaggaagtcaggactggaactcatgcaggtcaggaagcaggagctgatg 215

                                                                       
Query: 481 cagaggccatggagggatgttctttactggcttgcctcacctggcttgctcagcctactc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cagaggccatggagggatgttctttactggcttgcctcacctggcttgctcagcctactc 155

                                                                       
Query: 541 tcttatagaacccaagactaccagcccagagatcttcccacccacaaggggcctttcccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tcttatagaacccaagactaccagcccagagatcttcccacccacaaggggcctttcccc 95

                              
Query: 601 cttgatcactaattgagaa 619
           |||||||||||||||||||
Sbjct: 94  cttgatcactaattgagaa 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)