Query= MSMg01no417_i03.b1 MSMg01no417_i03.b1 CHROMAT_FILE:
MSMg01no417_i03.b1 PHD_FILE: MSMg01no417_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:24 2005
(484 letters)
>mm_chr13_105832559_105833444
Length = 886
Score = 855 bits (442), Expect = 0.0
Identities = 472/482 (97%), Gaps = 2/482 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggacagtcagggctatacagagaaaccctgtctcaaaaagcccccccc-cac 63
||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct: 205 gaattgcaggacagtcagggctacacagagaaaccctttctcaaaaagccccccccacac 264
Query: 64 acacacacaaaaagacattgcacttgaagtttaatgtcctttaatgaactcatgaccttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 acacacacaaaaagacattgcacttgaagtttaatgtcctttaatgaactcgtgaccttg 324
Query: 124 acctttgaccttctactttcttgtgttgtctggtttcttccaccttccatttgtaacagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acctttgaccttctactttcttgtgttgtctggtttcttccaccttccatttgtaacagt 384
Query: 184 tcatcatagtctaattgtctaacaaacctagttcttgcgtttaccaaaggagatttaaaa 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 tcatcatagtctaattgtctaacaaacctagttcttgcatttaccaaaggagatttaaaa 444
Query: 244 gatttgtttttgtttctgcgtctcactcagcatcaggtaaagtattaaaaactttagctt 303
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 445 gatttgtttttgtttctgcgtctcactcggtatcaggtaaagtattaaaaactttagctt 504
Query: 304 cttgagagtgccatcaccaatatttcttcgtggccttatcatatttcacatcctctctca 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgagagtgccatcaccaatatttcttcgtggccttatcatatttcacatcctctctcg 564
Query: 364 tgaaaattatcctcagaacatttcaaaggcactttgcctaacttcctgccctccaaaaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaaaattatcctcagaacatttcaaaggcactttgcctaacttcctgccctccaaaaat 624
Query: 424 gttgtctgaacttcatacttttt-atgtttctaaaagacagaaaaatctttcttttgaag 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttgtctgaacttcatacttttttatgtttctaaaagacagaaaaatctttcttttgaag 684
Query: 483 gg 484
||
Sbjct: 685 gg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 886
Length adjustment: 10
Effective length of query: 474
Effective length of database: 876
Effective search space: 415224
Effective search space used: 415224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_i03.g1 MSMg01no417_i03.g1 CHROMAT_FILE:
MSMg01no417_i03.g1 PHD_FILE: MSMg01no417_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:24 2005
(426 letters)
>mm_chr13_105902781_105903606
Length = 826
Score = 567 bits (293), Expect = e-166
Identities = 302/305 (99%)
Strand = Plus / Minus
Query: 122 aattacatcaaggccttttcatgattctttgggtgcccgccgaatcggaaattgagtggg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aattacatcaaggccttttcatgattctttgggtgcccgccgaatcggaaattgagtggg 767
Query: 182 ggcttccccactaggttctatcaatagatgggttagtgctattacccacatatgggggtg 241
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 766 ggcttccccactaggttctatcaatagatgggtgagtgctattacccacatatgggggtg 707
Query: 242 ttgctcagcaataaatagaaataaatacgggtgcatactacaacgtggatgaaccttgaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttgctcagcaataaatagaaataaatacgggtgcatactacaacgtggatgaaccttgaa 647
Query: 302 agcatgctcagtgaaagaagttcttaaagtggtcgcattacaggaatggctcctataact 361
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 646 agcatgctcagtgaaagaagttcttaaaggggtcgcattacaggaatggctcctataact 587
Query: 362 ggcataccaggtaaccagggagattaaaggagcccatgcttgcctagagctgaggctggg 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 586 ggcataccaggtaaccagggagattaaaggagcccatgcttgcctagagctgaggctgag 527
Query: 422 gggaa 426
|||||
Sbjct: 526 gggaa 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
