Query= MSMg01no418_i19.b1 MSMg01no418_i19.b1 CHROMAT_FILE:
MSMg01no418_i19.b1 PHD_FILE: MSMg01no418_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:47 2005
(588 letters)
>mm_chr13_42525485_42526473
Length = 989
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 1 gaagaggcg-atataaaaatagaatctctgaaccaaagggcttaggggctttgatgtgct 59
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagagggggatataaaaatagaatctctgaaccaaagggcttaggggctttgatgtgct 260
Query: 60 cagtaactgtgttctcatacatcatttaagaatctcagttcgagatcttcatggctcaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtaactgtgttctcatacatcatttaagaatctcagttcgagatcttcatggctcaat 320
Query: 120 tagggatctaacatgggaagcaaggagaattgaattgcttatgccagcaggtaggactaa 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tagggatctaacatgggaagcaaggagaattgaattggttatgccagcaggtaggactaa 380
Query: 180 ggttgtgatgataacatgttaagtcacccaacgaaatacagtatcattagtcatgttgac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttgtgatgataacatgttaagtcacccaacgaaatacagtatcattagtcatgttgac 440
Query: 240 tgagtcagtgccataagccctggtgcttggagtgtctttgtttctctttactaaaatgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagtcagtgccataagccctggtgcttggagtgtctttgtttctctttactaaaatgtt 500
Query: 300 aaatcctagataccttgtcaaggtcatcaaagtgttgtcaattgttagctggtgttacag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcctagataccttgtcaaggtcatcaaagtgttgtcaattgttagctggtgttacag 560
Query: 360 agacatttatacaggaaatgaagtcatgtgtcttgtccttgaaaaacttacaataaggag 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 agacatttatacaggaaatgaagtcatgggtcttgtccttgaaaaacttacaataaggag 620
Query: 420 agtttataacatcactaccagagacaaaactgaatagcaagggacttataacaacctggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttataacatcactaccagagacaaaactgaatagcaagggacttataacaacctggt 680
Query: 480 gtttatccacaccaaggacagatgttcaagttactcaatacttagggagatgagagaatg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttatccacaccaaggacagatgttcaagttactcaatacttagggagatgagagaatg 740
Query: 540 aatatgagcacaaagtgactagagctggcagcaaccaagttctgaccac 588
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatatgagcacaaagtgactagagctggcagcaaccaagttctgaccac 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_i19.g1 MSMg01no418_i19.g1 CHROMAT_FILE:
MSMg01no418_i19.g1 PHD_FILE: MSMg01no418_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:47 2005
(445 letters)
>mm_chr13_42620202_42621046
Length = 845
Score = 775 bits (401), Expect = 0.0
Identities = 434/445 (97%)
Strand = Plus / Minus
Query: 1 ggaccctcctgtctctgcctcacgagtgtacctgtcataggatttacccatttaacctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggaccctcctgtctctgcctcacgagtgtacctgtcataggatttacccatttaacctcc 586
Query: 61 cgtgatggtggcttatttctagatgaaattatgaagagagcccagtgcacttcaggaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cgtgatggtggcttatttctagatgaaattatgaagagagcccagtgcacttcaggaggg 526
Query: 121 tattcagggacacaacggcttcagacagaatcctcactgtgctcctcggcacagcctaaa 180
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 525 tattcagggacacaaaggcttcagacagaatccacactgtgctcctcggcacagcctaaa 466
Query: 181 cactttcgctgtcgtcaggaaggcgaatgaagagttcccccactggacctaattcctgct 240
||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 465 cactttcgctgtcgtcaggaaggcgaatgaatagttctcccactggaactaattcctgct 406
Query: 241 acaggtgaaagtcacggaaaggagggcggaaagtattaaatgttattaatttttgttgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acaggtgaaagtcacggaaaggagggcggaaagtattaaatgttattaatttttgttgta 346
Query: 301 gagttgtcttctttatataagaaaagttccctggtactattccattaggagtgtgtaagt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gagttgtcttctttatataagaaaagttccctggtactattccattaggagtgtgtaaga 286
Query: 361 gaagatccatgtcttgcttctgctcagccacaggaattcactgggacctctggtcttcat 420
| |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 285 ggagatccgtgtcttgcttctgctcagccacaggaattcgccgggacctctggtcttcat 226
Query: 421 cttgcttgttgtaaaagaagaagac 445
|||||||||||| ||||||||||||
Sbjct: 225 cttgcttgttgtgaaagaagaagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
