BAC Information

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BAC

Clone NameMSMg01-418L17
Chromosome13 (Build37)
Map Location 22,427,955 - 22,428,067
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21
Downstream geneV1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418L17.T7 (MSMg01no418_l17.b1)MSMg01-418L17.TJ (MSMg01no418_l17.g1)
ACCAG513998AG513999
length766834
length of high quality
(start - end)
604 (45 - 648)111 (75 - 185)
definitionCHROMAT_FILE: MSMg01no418_l17.b1 PHD_FILE: MSMg01no418_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:00 2005CHROMAT_FILE: MSMg01no418_l17.g1 PHD_FILE: MSMg01no418_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAACTGAACATACCGAAGGGCTGAGAAGCATCTGANAAAAATGTT
CAACATCCTTAATTATCAGGGAAATACAAATCAAAACAACCCTGAGATTC
AACCTCACATCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCCG
GGCAGTGGTGGGGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGACAG
GCAGATTTCTGAGTTGCAGGAGAGCCTGGTCCACAGAGTGAGTTCCAGGA
GTGCCAAGGCTATACAGAGAAACTCCTGTCTCAAAAAACAACAACAACAA
CAACAAAATTCAGGTGACAGTAGACACGGGTGAGGATGTGGAGAAAAAGG
AACACTCCTCCCTTGCTGGTGGGATTGCAAGCTTGTACAATTACTCTGGA
AACCAGTCTGGCAGTTCCTCAGAAATTTGGACATAGTACTACTGGAAGAT
CCAACAATACCTCTCCTGGGCATATACCCAAAAGATGTTCCAACTTGTAA
TAAAAACATACGTTCTACTATGTTCATAGGAGCCTTATTTATAATAGCCA
GAAGCTAGAAAGAACCCAGATGTCCTTCAACAGAGAAATGGATACAGAAA
ATGTGATATATTTACACAATGGAGTACTACTCCCNCATTAAAAACAATGA
TTACCTTGCAATTCTTATGCAAATGGATGGATCTGGAGAATATCATCCTG
AGTGAGGTAACCCATC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCCTCCACAGCACCGAGG
GCATGGGCTCTGGGCTTCCGGAAGCCAGGGGCTGTTAGATAAGAGCAGCA
GGCAGAGCAGCTGGGGGAAGGGGGGTGGTGGTGGGAGNNTTNTNNNNTNN
TNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTNTTNNTTT
TTTTTTTTTCTTTNCTCTTTCTTTCCCCCCTTTTCTCCCTCCTCTCCCTT
TTCCTCCCCNTCCTTTTTTTTTTTTCCCCTCCNCTCTCCCTCCTCCTCTT
CTCCTTTCCTTTCCTCTCCTCTCCTTGTTTTCTTTTTTCTTCCCTCCTTC
CCTTTCCTCCTTCTTCCTTTTCTTTCTTTCTTTCTCTTCTCCCTCTTTTT
CTCTTTCTTTCCTTCTTTTCCCTCCTTCCTTCTCCTCCTTTTTTCTTCTT
CTTTCTCCTCCTTTTTCTTCTTTTTTTCTCCTCTTTTTTTTCTTCCTTTT
CTCCTTCTTTCTCTTTTTCTCCTTTCTTCTCCCTTTCTTCTCTTTTTTTT
TCTCTTTTCTCCTCTTCTCCTCTTCCCTTTTCCCCCTTTTTTTTCTCTCT
TCTCCTCTCCTTTTCTTTTTTCCCCCTTCCCTTCCCCTTTCCCTTTCCCC
TTCTTCCCTTTTCCTTTCCCCTTTTTTTCCCCTTTCCTTCCCCCCCCCCT
CCCTTCTTTTTTTCCCTCTCTTTCCTTTTCCATTTCCTTCCTCTTTTTTT
CCCCTTCCCCCTTCTCTTTCCCTCTTCTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_l17.g1 MSMg01no418_l17.g1 CHROMAT_FILE:
MSMg01no418_l17.g1 PHD_FILE: MSMg01no418_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:01 2005
         (111 letters)



>mm_chr13_22427755_22428264
          Length = 510

 Score =  178 bits (92), Expect = 9e-50
 Identities = 107/114 (93%), Gaps = 5/114 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttagcctccacagcaccgagggcatgggctctgggcttccggaagccaggggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtttagcctccacagcaccgagggcatgggctctgggcttccggaagccaggggctg 260

                                                                 
Query: 61  ttagataagagcagcaggcagagcagctgggggaaggggggtg----gtggtgg 110
           ||| |||||||||||||| ||||||||||||||| ||||||||    |||||||
Sbjct: 261 ttatataagagcagcaggaagagcagctggggga-ggggggtgaggggtggtgg 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 510
Length adjustment: 8
Effective length of query: 103
Effective length of database: 502
Effective search space:    51706
Effective search space used:    51706
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)