BAC Information

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BAC

Clone NameMSMg01-419D17
Chromosome13 (Build37)
Map Location 71,135,830 - 71,136,015
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419D17.T7 (MSMg01no419_d17.b1)MSMg01-419D17.TJ (MSMg01no419_d17.g1)
ACCAG514382AG514383
length710759
length of high quality
(start - end)
186 (327 - 512)248 (66 - 313)
definitionCHROMAT_FILE: MSMg01no419_d17.b1 PHD_FILE: MSMg01no419_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:40 2005CHROMAT_FILE: MSMg01no419_d17.g1 PHD_FILE: MSMg01no419_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTCATATTTGCGGGGGGATANGAGAACCACATACGATCACCGCGG
GAANNCTGTGTGCGCAAACACAGAGGAGAAAGGGCGCGTGATACAGCGAG
AGCAACATACAGCATCTCTGGGCACCCTGTGCACAGTGGGAAGAGGAGTA
GACCCAGAACACAGATTTCCCAGAGGCCACGGGGTGGGAAGAAGCACCTG
CGATCTCTCTGAGAAGGGCCCCGAGACACGTGCTCATAATATATTATGTG
TATGGCCCACAAAAGGGGGTGGACGGCCAGGAGTGGAAAAGGAACCAGGG
ACCCCCACCCTGTCCCTTCCTTGGCATCAAGCTCTGTCTTTCTGGAGGTG
ACAGTTATCTGATCCCCTGACATCAGTCTCCATTGAGGTACTAACAACAT
GCCCTTGCAGATCTATCTTGTTCGTATCTCTGAAGGCCTCATGGCTGTGC
TATCCAGTTCTTTCACAAAACTTGGCAGATTACCCACCCCTCCCATGGAA
CTAATACTCAATGTGGAATTTTAGACTGTATGTCTCCCACTCTGTCCATT
GTTGGATACATTAAAGGAGTCATAGTGACCTAGCCAAGGCCCTGGGAAGA
TACCACGGAACTCAATAGAACTCTACACCTTGGCATGCCGAAAGTCTACT
CTCTAGGAGAGGCTGGCCCCTATTCAGAACAAGCGGGGAGTTCTCCGTCA
GAACCCGGGA
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGCCGAGGAATATTGAATGGCTGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAA
CCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GATGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTGTGGC
GGTTCCTCAGAAAATTTGTACATAGTACTACCAGAGGATCCCGCAATACC
TCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACAT
TTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTGTGAAAT
TCCTAGGCAAATGTTTGGACCTGGAGGGCATCATCCTGAGGGAGGGAACC
CATCCCAAAAGACTCCCATGATATGTACTCGCTGAAAAGGGGAAATTAAC
CCGAAACTTATTATACCAGAAATATGGACAATTTGCAAACCCTGTAATTA
AAAAAAAAAAACCAACTTGGGAACTTTTGCCCTCTCTTAATTGGAAAATA
CCCCCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_d17.b1 MSMg01no419_d17.b1 CHROMAT_FILE:
MSMg01no419_d17.b1 PHD_FILE: MSMg01no419_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:40 2005
         (186 letters)



>mm_chr13_71135630_71136215
          Length = 586

 Score =  360 bits (186), Expect = e-104
 Identities = 186/186 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagctctgtctttctggaggtgacagttatctgatcccctgacatcagtctccattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaagctctgtctttctggaggtgacagttatctgatcccctgacatcagtctccattga 260

                                                                       
Query: 61  ggtactaacaacatgcccttgcagatctatcttgttcgtatctctgaaggcctcatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtactaacaacatgcccttgcagatctatcttgttcgtatctctgaaggcctcatggct 320

                                                                       
Query: 121 gtgctatccagttctttcacaaaacttggcagattacccacccctcccatggaactaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctatccagttctttcacaaaacttggcagattacccacccctcccatggaactaata 380

                 
Query: 181 ctcaat 186
           ||||||
Sbjct: 381 ctcaat 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)