BAC Information

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BAC

Clone NameMSMg01-420M23
Chromosome13 (Build37)
Map Location 69,747,077 - 69,747,530
singlet/doubletsinglet
Overlap geneSrd5a1
Upstream gene1700001L19Rik, Adcy2, LOC666205, LOC218332, Pols, A530095I07Rik
Downstream geneNsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420M23.T7 (MSMg01no420_m23.b1)MSMg01-420M23.TJ (MSMg01no420_m23.g1)
ACCAG515586AG515587
length736749
length of high quality
(start - end)
196 (119 - 314)454 (68 - 521)
definitionCHROMAT_FILE: MSMg01no420_m23.b1 PHD_FILE: MSMg01no420_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:46 2005CHROMAT_FILE: MSMg01no420_m23.g1 PHD_FILE: MSMg01no420_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCAAANGAANNACCACATTCCTACCTCGNCGGAANNNNGNCAA
ACTTACATCACCGAGGGAGAGNNANAGCCCCCCCCCACACACAGACACAC
ACATACACACATAGAGCCACACAGAGACACAAATAGATATATACACAGAC
ACACAGAGACACACACAGAGACACAAATAGAAATACACACACACACATAC
AAACATATACATACACAGACACACATACACACACAGAGACATACAAACAT
ACATAGACACATACACACACAGACACACAGAAACATACACATATACACAC
ATATGCACACATATTTTTTTTTTACATACATACACACACACATACATACA
CTCATATACACATACATTCACACACATACACACACATAAACACACATAAA
CACACACACATACACACATAGACAGACAGAGACATACACATATACACACA
TATACACATGCACATACACATATATACACACGCACATATATACACATATA
CACACATAACACATACATACATACACATACACACATATACACATACATAC
ACACACATATATACACATACACTATACACTGTCCTACTCAAGTGTCCAGG
ATGCCCCCAAAGGACATGTTCAGCCAAGCAAGATAAAACAACAACGCAGC
CTTCTGGACTAGAGATTGCTCATCATAATCTGTCTGTCCGCGATTTAACT
TAATGACAGACCGGGTAAATCCCACAGAGGATAGCG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTGAGATAGAATGATTCCCTGTCCCCACTCCC
CCAGTTGAATAGCTGGGTTGCTCCAGACTGGGAAGAAAGAAATAAAGTAG
AACTAATGATGAATCAGGCTACCAGGGGGCTGAGCAGGTAGCAGGTTTGT
GAAGCACGCTAGGAAAACACCCGTGCTGCACATGTTTGGGATACATGTAT
TCTCACTGCTAGACGTTAGTGCTGGCACTAATGTCACATGTTACGCTTGT
ATGAAGCTCTGGGGAAACTGATACCCCAGTCCGTGAATTGAGAGGTCAAG
TTTAATGGTTACAACTGGTCTCAGCTCAACCCCACTGGTCCTCTGACTTA
TCTGATTGCTTATCTCTAAGGCACGGATCCCGGTACAGATCTGAATTTGC
CTCTGTGCCTCATTCTGAACTCTGTAACTACTGTATGATAAGCGTCTGCA
AACGCATGGATTTGAATAAGACAGTGATGTTTAGTGCCTATGAAACAGTG
AAAAGAGCCTCGCAGTGGGCTCATGAAAACTGCTCCTTCTCCTTCTAGTT
TCCCATTATGGGCCTGAAAAAAGGCGCTTGTGAAACTGATTCCCGTTACC
TCCCTCGCTCTATGACCGATCAGGGGACTTCTAGGAAGACTCCTCCAAAA
AGAAAAGGGGAGGTGGTCCCATAAAAAAACTTTCCCAGACAAATGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_m23.g1 MSMg01no420_m23.g1 CHROMAT_FILE:
MSMg01no420_m23.g1 PHD_FILE: MSMg01no420_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:46 2005
         (454 letters)



>mm_chr13_69746877_69747730
          Length = 854

 Score =  870 bits (450), Expect = 0.0
 Identities = 453/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagatagaatgattccctgtccccactcccccagttgaatagctgggttgctccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagatagaatgattccctgtccccactcccccagttgaatagctgggttgctccaga 260

                                                                       
Query: 61  ctgggaagaaagaaataaagtagaactaatgatgaatcaggctaccagggggctgagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaagaaagaaataaagtagaactaatgatgaatcaggctaccagggggctgagcag 320

                                                                       
Query: 121 gtagcaggtttgtgaagcacgctaggaaaacacccgtgctgcacatgtttgggatacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagcaggtttgtgaagcacgctaggaaaacacccgtgctgcacatgtttgggatacatg 380

                                                                       
Query: 181 tattctcactgctagacgttagtgctggcactaatgtcacatgttacgcttgtatgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattctcactgctagacgttagtgctggcactaatgtcacatgttacgcttgtatgaagc 440

                                                                       
Query: 241 tctggggaaactgataccccagtccgtgaattgagaggtcaagtttaatggttacaactg 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggggaaactgagaccccagtccgtgaattgagaggtcaagtttaatggttacaactg 500

                                                                       
Query: 301 gtctcagctcaaccccactggtcctctgacttatctgattgcttatctctaaggcacgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctcagctcaaccccactggtcctctgacttatctgattgcttatctctaaggcacgga 560

                                                                       
Query: 361 tcccggtacagatctgaatttgcctctgtgcctcattctgaactctgtaactactgtatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccggtacagatctgaatttgcctctgtgcctcattctgaactctgtaactactgtatg 620

                                             
Query: 421 ataagcgtctgcaaacgcatggatttgaataaga 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 ataagcgtctgcaaacgcatggatttgaataaga 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)