Query= MSMg01no421_c22.b1 MSMg01no421_c22.b1 CHROMAT_FILE:
MSMg01no421_c22.b1 PHD_FILE: MSMg01no421_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:16 2005
(520 letters)
>mm_chr13_31906542_31907461
Length = 920
Score = 882 bits (456), Expect = 0.0
Identities = 511/550 (92%), Gaps = 34/550 (6%)
Strand = Plus / Plus
Query: 5 gaattctttgggaaatggcagcatttagagggctttaggaatgatttaaaggagaggaga 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gaattctttgggaaatgggagcatttagagggctttaggaatgatttaaaggagaggaga 230
Query: 65 gagacccctcctgttttctatcctagggtaaatgcaggaaaaccaacacatttagcacct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gagacccctcctgttttctatcctagggtaaatgcaggaaaaccaacacatttagcacct 290
Query: 125 ttaaatctcaaggcctctga---------attatcaaaaaccaggtcattgttcccctgc 175
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 291 ttaaatctcaaggcctctgaatttccgtcattatcaaaaaccaggtcattgttcccctgc 350
Query: 176 tgtg-------------------caggcctccaagctatactgtacgggtttaagtgtgg 216
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgtgcagagatccttaatggctacaggcctccaagctatactgtacgggtttaagtgtgg 410
Query: 217 cgatcacattc------tttttttttttaaatctgctggtagaggagctatgaaaactga 270
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 411 cgatcacattcttttttttttttttttttaatctgctggtagaggagctatgaaaactga 470
Query: 271 cctctgatttaggcagaaatcagcacaggctccaaaggagtcgctcagaggactgcccag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cctctgatttaggcagaaatcagcacaggctccaaaggagtcgctcagaggactgcccag 530
Query: 331 ggacgccagtgtgcgcagcagttcccaaagttagttctcagggcccaggagatttttctg 390
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 531 ggacgccagtgtgcgcagcagttcccaaagttagttctcagggcccgggagatttttctg 590
Query: 391 gagtctccgaagccacagggcagcagcgtcccaggaaccaacggttccttcgaggctcac 450
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 591 gactctccgaagccacagggcagcagtgtcccaggaaccaacggttccttcgaggctcac 650
Query: 451 tttgtaaagatgactttctcatactaccttggaaggtcgcactagtcatggcaagagaag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tttgtaaagatgactttctcatactaccttggaaggtcgcactagtcatggcaagagaag 710
Query: 511 agcacggaaa 520
||||||||||
Sbjct: 711 agcacggaaa 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_c22.g1 MSMg01no421_c22.g1 CHROMAT_FILE:
MSMg01no421_c22.g1 PHD_FILE: MSMg01no421_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:16 2005
(499 letters)
>mm_chr13_31964459_31965357
Length = 899
Score = 957 bits (495), Expect = 0.0
Identities = 498/499 (99%)
Strand = Plus / Minus
Query: 1 cagaacaaaccaagaattagatcatctatgaattccacatgtgacttttctttagggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cagaacaaaccaagaattagatcatctatgaattccacatgtgacttttctttagggaac 640
Query: 61 attatccagggtaattggtcatagcatgaatcctgtccagggggtcattccattagtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 attatccagggtaattggtcatagcatgaatcctgtccagggggtcattccattagtgtt 580
Query: 121 aaaagcaacaggctttctgaaatttgcctgatatcctaagaaataaatagttgctagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aaaagcaacaggctttctgaaatttgcctgatatcctaagaaataaatagttgctagaga 520
Query: 181 agccattgtgtggctctgccatatgaatgtgtgacatcattgacaccttgcccctagagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agccattgtgtggctctgccatatgaatgtgtgacatcattgacaccttgcccctagagc 460
Query: 241 ccctttatttaatacaagagtcacaccggatcagtgcaacagctgagccaccttctaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ccctttatttaatacaagagtcacaccggatcagtgcaacagctgagccaccttctaaga 400
Query: 301 gaggtagagcaaaaggcaagcatctggcacaagacagggtcagaaatgatctccaacctg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 399 gaggtagagcaaaaggcaagcatctggcacaagacagggtcagaaatgatctccaacccg 340
Query: 361 aagcttaggtcctacagtactgaaaaggtggcaggtctgcaagggaacatagtaatccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aagcttaggtcctacagtactgaaaaggtggcaggtctgcaagggaacatagtaatccag 280
Query: 421 gcacaggcgtgctggtagttgtggttgggactttaggacatttagctcgtggtacacttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcacaggcgtgctggtagttgtggttgggactttaggacatttagctcgtggtacacttc 220
Query: 481 tgacaatactcactgaaac 499
|||||||||||||||||||
Sbjct: 219 tgacaatactcactgaaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
