BAC Information

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BAC

Clone NameMSMg01-421H07
Chromosome13 (Build37)
Map Location 46,586,776 - 46,587,245
singlet/doubletsinglet
Overlap genenone
Upstream geneGmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24
Downstream geneCap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421H07.T7 (MSMg01no421_h07.b1)MSMg01-421H07.TJ (MSMg01no421_h07.g1)
ACCAG516079AG516080
length777776
length of high quality
(start - end)
254 (71 - 324)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no421_h07.b1 PHD_FILE: MSMg01no421_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:38 2005CHROMAT_FILE: MSMg01no421_h07.g1 PHD_FILE: MSMg01no421_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACAATCCGCGGAA
TTCAACAGCAGGTATCACAAAAAGCTTACAAATTCATGGACACTGACAAC
TCAATACTGAATGAAAAATTGAGTCAAGACAGATATTTAGAAAGAATTTA
ATGACTTCCCAGAATTGAGTGAAAATGAATATACAATGAATCCAAACTTA
AAGGACAAAAATGGAGGTAGTTCTAAGAGGCAAGTTATTGTACTAAATGT
CTACATTTAAAAAAAATAAAGGATAAATCTCATAATAGTAAATTAGCAGC
ACACATGAAAAAGATTGGGGAATATCTATTAAAAAGGATGAAGTCAAAGT
ATCTTTAATTTCAAATGATATGATAGTATACATAAGTGACCATAAAAGTT
TCACCAGGAAACTCCTACAACCGATGGATACATTCAGCAAAGTAGCTGGA
TACAAAATGTACTCACGAAAGTCACTAATCCTCCTATATACAAATAACAA
ATGGTTGGAAAAAAATCAGGGAAACAACACATTTCATATAGCCCCAAATA
ATAGAAAATATCTTAGAGTAACTCTAACCAAGCAAGCTAAAGATTTATAT
GAACAAAACTTTAAGACGCTGAAAAAAGAAATTCAAGGAGATGTCAGCAG
AAGATAGCAAGAACTTTTCTTTCTTGCCCATTGAACCGTAGGATTAACAG
TAAAAATTGGCCCCCCTTGCCAAAGCAATCCTTAAATTCTATGGTAATGC
TCCATCTAAATTCTCTACAAATTCTTC
AATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAGAATCCACCTATGTGTAACATAG
AAGGCTTATGTGTATCATAGTTGCAGTCAATGCTGGCTAGCTGGGCTACT
GTGACACACACTAGCCAGAGAACACTCTGGATAATATGTATTGTTTAACA
GGTGTGTCTGTCCAGGCTCCTGACACTACAATTCGATGTTGCCACCTCCA
AAACTCATGCTTGAGACCTACACAATGAAGTTATGAAAACATTCGTGAAA
TAGCTTATAAGGTCTTAAGTTTTATTATTTTGCCTTGAACCACATTCGTA
GCATGTGGCCCCGAAAGCTGAGGTCAGACAAGTCCGGTAGAAGAAATTAC
AGTTGTTTCCCCAACTACTTTAAACAAATAGATCATAGGTCAGTGGTTAA
CTATGAAACAAATATTATATTGATGTATTTTTTTCTTCACATGTACTAAG
CACAGGTATACTTATGTTGATGTACTTACTTTGATATGCATAATTATAAA
ACAATTAACTTCCCGGAAGCTCTTATATGGTCATCTTTAAAATGGAAAAT
TTCCATGTCATCCCTCTTTCCATCGGGGATTTTCCTAAGTTGGACTCTTT
GCTAATCTTGGTTCTTAAAAATCCTCCAGTTTTCTCCTTTTTTTTTTTGA
TTTACTCCATATGTCCTGGACCAAAATGGGTGTTAAACGTCCTTCTTTCT
TTGTTAATCTCAAACACCTGTTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_h07.g1 MSMg01no421_h07.g1 CHROMAT_FILE:
MSMg01no421_h07.g1 PHD_FILE: MSMg01no421_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:38 2005
         (472 letters)



>mm_chr13_46586576_46587445
          Length = 870

 Score =  837 bits (433), Expect = 0.0
 Identities = 463/473 (97%), Gaps = 4/473 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaatccacctatgtgtaacatagaaggcttatgtgtatcatagttgcagtcaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cacagaatccacctatgtgtaacatagaaggcttatgtgtatcatagttgcagtcaatgc 611

                                                                       
Query: 61  tggctagctgggctactgtgacacacactagccagagaacactctggataatatgtattg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 610 tggctagctgggctactgtgacacagactagccagagaacactctggataatatgtattg 551

                                                                       
Query: 121 tttaacaggtgtgtctgtccaggctcctgacactacaattcgatgttgccacctccaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 550 tttaacaggtgtgtctgtccaggctcctgacactacaattcgatgttgccacctcc-aaa 492

                                                                       
Query: 181 ctcatgcttgagacctacacaatgaagttatgaaaacattcgtgaaatagcttataaggt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 491 ctcatgcttgagacctacacaatgaagttatgaaaacattcatgaaatagcttataaggt 432

                                                                       
Query: 241 cttaagttttattattttgccttgaaccacattcgtagcatgtggccccgaaagctgagg 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 cttaagttttaggattttgccttgaaccacattcgtagcatgtggccccgagagctgagg 372

                                                                       
Query: 301 tcagacaagtccggtagaagaaattacagttgtttccccaactactttaaacaaatagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcagacaagtccggtagaagaaattacagttgtttccccaactactttaaacaaatagat 312

                                                                       
Query: 361 cataggtcagtggttaactatgaaacaaatattatattgatgtatttttttcttcacatg 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 311 cataggtcagtggttaactatgaaacaaatattatattgatgta-ttttttcttcacata 253

                                                                
Query: 421 tactaagcacaggtatacttatgttg-atgtacttactttgatatgcataatt 472
           ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 252 tactaagcacaggtatacttatg-tgtatgtacttactttgatatgcataatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 870
Length adjustment: 10
Effective length of query: 462
Effective length of database: 860
Effective search space:   397320
Effective search space used:   397320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)