BAC Information

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BAC

Clone NameMSMg01-421L05
Chromosome13 (Build37)
Map Location 21,291,294 - 21,291,776
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421L05.T7 (MSMg01no421_l05.b1)MSMg01-421L05.TJ (MSMg01no421_l05.g1)
ACCAG516265AG516266
length773761
length of high quality
(start - end)		487 (46 - 532)470 (77 - 546)
definitionCHROMAT_FILE: MSMg01no421_l05.b1 PHD_FILE: MSMg01no421_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:58 2005CHROMAT_FILE: MSMg01no421_l05.g1 PHD_FILE: MSMg01no421_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTAGAGGTCACGGACGCTGTACGGAAGCGACATTTGACGGCC
AAATGCCACTCAGGGCAGAGCAGTGAATGTTCAGTATTTAAACTCTGGTG
TATCTGGGGCTAAGTTTAGAGAGTAGGCATACCTATTTGCAAATTTTAAT
CAACTTTGTACTGATAGAATTATATATATATTTTTTATTAGCACAAGGAC
CTCCTCCCCCCCCCCCCGCAAAGATTGTCGTTGTCTTTGTGCGAAAAGAA
TAGTTTTGGGTTAGTATGCCTTTTCTTATCTTTCCGGACTCTTTTTTTCA
TAATCTATTTTAAATGATTAGGAAAAATTTGAGAGTATAAGTGAATAACG
AGCCTCTCTCTTCAACATACAAGATCTGTTGTATTTTCTTTCATAAGCTG
CTGCCCTTGGGAAGAACGTTATACAGGAAGTGACACTCAACAAGGCATCA
TTATAATTAATGATTATAATTAAGGTACTTCTTATAATTGTTTTTCCTAA
TTGCAAACTCCATATGAATCACAGAATATAGAATAAAGTAAAAATTGAAA
ATTGCCCGCATTCTCACCTCTTACTATTAACTACTGCCAAATTTTCCCCA
TATTTAACTAAATTCTTGTCATATAAAAACAAACTAACCCCCCTTAACGT
TCCATTGTGGGGTCCCAAATTATATTTTATTGTTTCCCAAAGTTAAACCT
ATGGGCCTATACTTCCCCCTTTT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAACTGAGAAATACCAAATGGCT
GAGAAGCACCTAAAGCTTCAACATCCTTAGCCATCAGGGAAATACAAATC
AAAATGACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCTA
AAACTCAGGTGACAGCAGATGCTGGTGATGATGTGGAGAAAGAGAAACAT
TCTTCTATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCC
GTTTGGCAGTTTTTCAGAAAATTGGACATAGTACTACCTGAGGACCCAGC
TATACCACTCCTGAGCATATACCCAAAAGATGCTCCAACATATAACAAGG
ACACATGCTCTACTATGTTCATATCACCCTTATTTATAATAGCCAGAAGT
TGGAAAGAACCTAGATGTCCTTCAGCAGAGGAATAGATACATAAAATATG
GTACATTTACACAATCGAGTACTACTCAGCTATTAAAAATAATGAATTCA
TGAAATTCTTAGGCAAATAGATGAAACAGAGGTGAATACTCACTGCCCAC
CATTGGACTGAGTAAGAGGTCGCCCATGGAGGAGTTAGAGAAAGGACTTG
AGGAGCTGAAGGTGTTTGCTACCCCCTAGGATGAACAAACATATCCATTC
GTCCGGACCACCCAAAGCTCCCCGGGACTAAACCATCCAACCTAGGTCAC
GGGGTGGGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_l05.b1 MSMg01no421_l05.b1 CHROMAT_FILE:
MSMg01no421_l05.b1 PHD_FILE: MSMg01no421_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:58 2005
         (487 letters)



>mm_chr13_21290899_21291787
          Length = 889

 Score =  857 bits (443), Expect = 0.0
 Identities = 474/485 (97%), Gaps = 4/485 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctagaggtcacggacgctgtacggaagcgacatttgacggccaaatgccac 64
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 878 gaattcactctagaggtcagggacgctgtacgaaagcgacatttgacggccaaatgccac 819

                                                                       
Query: 65  tcagggcagagcagtgaatgttcagtatttaaactctggtgtatctggggctaagtttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tcagggcagagcagtgaatgttcagtatttaaactctggtgtatctggggctaagtttag 759

                                                                       
Query: 125 agagtaggcatacctatttgcaaattttaatcaactttgtactgatagaattatatatat 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 758 agagtaggcatacctatttgcaaattttaatcaactttgtactgatagaatt-t-tatat 701

                                                                       
Query: 185 attttttattagcacaaggacct--cctccccccccccccgcaaagattgtcgttgtctt 242
            ||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||
Sbjct: 700 tttttttattagcacaaggacctcccccccccccccccccgcaaagattgtcgttgtctt 641

                                                                       
Query: 243 tgtgcgaaaagaatagttttgggttagtatgccttttcttatctttccggactctttttt 302
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 640 tgtgcgaaaagaatagttttgggttagtatgccttttcttagctttccgaactctttttt 581

                                                                       
Query: 303 tcataatctattttaaatgattaggaaaaatttgagagtataagtgaataacgagcctct 362
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 580 tcataatctattttaaatgattaggaaaaattcgagagtataagtgaataacgagcctct 521

                                                                       
Query: 363 ctcttcaacatacaagatctgttgtattttctttcataagctgctgcccttgggaagaac 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctcttcaacatacaagatctgttgtattttctttcataagctgctgcccttgggaagaac 461

                                                                       
Query: 423 gttatacaggaagtgacactcaacaaggcatcattataattaatgattataattaaggta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gttatacaggaagtgacactcaacaaggcatcattataattaatgattataattaaggta 401

                
Query: 483 cttct 487
           |||||
Sbjct: 400 cttct 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 889
Length adjustment: 10
Effective length of query: 477
Effective length of database: 879
Effective search space:   419283
Effective search space used:   419283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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