BAC Information

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BAC

Clone NameMSMg01-421O04
Chromosome13 (Build37)
Map Location 17,011,687 - 17,011,932
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665157, Inhba, LOC625181, LOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421O04.T7 (MSMg01no421_o04.b1)MSMg01-421O04.TJ (MSMg01no421_o04.g1)
ACCAG516407AG516408
length770735
length of high quality
(start - end)
247 (74 - 320)83 (79 - 161)
definitionCHROMAT_FILE: MSMg01no421_o04.b1 PHD_FILE: MSMg01no421_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:12 2005CHROMAT_FILE: MSMg01no421_o04.g1 PHD_FILE: MSMg01no421_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACCGCGGAAT
TCTCCTCAGAGGTAACGAGATTGAACAGTCTCCTGGGGTCTTGGGTGTAT
GTTAAAGTAGAAGCATCCTTTTAGCCCCATAATTAGAGTATCATAGATTC
AACCCTTTCCTCTTCCTATCATGAGTCTTCTCTGCCTATCTGAATTCATA
AAAAATGCTTACTGTGTAGTGGGGGCTGGAGAGATGGCTCAGCAGCCAAG
AGCATTGACTGCTCTTCTGAAGGTCTTGAGTTCAAATCCCAACAACCACA
TGGTGGCTCACAACCATCCATAATTAGATCTGATGCTCTCTTCTGAGGTG
TCTGAAGACAGCTACAGTGTACTTAAATATAATAAAAAAATAAATCTTTT
AAAAACATCCTTACTCTGTATGATCAAGTTGATCTGTTTGCTATAAACAT
TATTGTTGTATGAGAACATTCTTAGGGAGACTAAAATAAATATCTACTAA
CTCCAGGTAGGGAATGGATGACAGAGTAAAGTACAAGTACCACAAAAGTC
CAACTGGCTAAACCAATGAGTTTTATTGAGGTTACTGTTATAGGAATACA
GATGATAAAGACAGCGGCATCAGTGAAGGTTACCCAGCATGTGTGACAGC
TTGAGATAATTGGTAACTTGACGGTTACAGCACAGCCTACAGGCAGCTTC
AACAGGCTGAAGTCCTTTTCTGTGTAACTTGTGTTCTTCTCAGCCTTCTT
TCAAGAAAGTTCAGCCTATT
GGCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTATAGCCCTGGCTGTCCT
GGAACTCACTTTGTTGACCAGGCTGGCCTCTAACTCAGAAATCCGCCTGC
CTCTGCCTCTGCCTCCCCAGTGCTGTGATTAAAGGCGTGCGCCACCACGC
CCAGCCTCTATTCCTCTATTCTATGACTGGGGGCATCCATTTCTGTGTTT
GCTTAGGCCCGGGCCTATTCTCCCAAAAGAAAGCTATTTCTGGGCCCTTT
TCCAAAAATTTGGCTAGGGAAAGCAAGGGGTTCTCCGTTTTGGAGGTTGA
TTTGGGAAAGGATCCCCCGGTATTGGGGGTCTCCTAAAGGGGGCCCCCTT
TTTTTTCCCCAAACTCCCAAGGGGGTGTTTGGTGGACCTCCTCCCGGGGG
GGGGGTTTTTTTTTTAAGGGGGGCCTTTCTCTCCCACATCACCGTGGGGC
GCCCGCTGTTTTTTTTCTTTTTTGGGCACCCCCCCCCCAGGAGAAGGTGG
CTTTAATTTTTTTTTTTCCCCCTCTTTTTTCTTTTTCTTTAAAAAAAACT
ATTCTTCTTCGTTGGTTTCTCAAATTATCACTCTTACTCCTTTTATTTTC
GTTTTTCTTTGCTCACCATACCTCCCTATATCCTTTTTCATATTTTGTCT
GCTCCCCCCCCCTCTCTTCTTTTTCTCTTCGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_o04.b1 MSMg01no421_o04.b1 CHROMAT_FILE:
MSMg01no421_o04.b1 PHD_FILE: MSMg01no421_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:12 2005
         (247 letters)



>mm_chr13_17011487_17012134
          Length = 648

 Score =  429 bits (222), Expect = e-125
 Identities = 240/246 (97%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagtctcctggggtcttgggtgtatgttaaagtagaagcatccttttagccccata-a 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aacagtctcctggggtcttgggtgtatgttaaagtagaagcatccttttagccccataca 260

                                                                       
Query: 60  ttagagtatcatagattcaaccctttcctcttcctatcatgagtcttctctgcctatctg 119
           ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 261 ttagagtatcacagattcaaccctctcctcttcctatcgtgagtcttctctgcctatctg 320

                                                                       
Query: 120 aattcataaaaaatgcttactgtgtagtgggggctggagagatggctcagcagccaagag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattcataaaaaatgcttactgtgtagtgggggctggagagatggctcagcagccaagag 380

                                                                       
Query: 180 cattgactgctcttctgaaggtcttgagttcaaatcccaacaaccacatggtggctcaca 239
           || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgactgctcttctgaaggtcctgagttcaaatcccaacaaccacatggtggctcaca 440

                 
Query: 240 accatc 245
           ||||||
Sbjct: 441 accatc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space:   152082
Effective search space used:   152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)