BAC Information

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BAC

Clone NameMSMg01-423G23
Chromosome13 (Build37)
Map Location 116,101,671 - 116,102,083
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423G23.T7 (MSMg01no423_g23.b1)MSMg01-423G23.TJ (MSMg01no423_g23.g1)
ACCAG517591AG517592
length803774
length of high quality
(start - end)
293 (62 - 354)413 (59 - 471)
definitionCHROMAT_FILE: MSMg01no423_g23.b1 PHD_FILE: MSMg01no423_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:07 2005CHROMAT_FILE: MSMg01no423_g23.g1 PHD_FILE: MSMg01no423_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATATTTCGAGGATCCGCGGAATTCCTGATCTTTT
CCAGACAATATATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCA
GCATCTAATGAAATGATCATGTGTTTTTTGTCTTTGAGTTTGTCTATATA
GTAGGTTACTTTGATGGATTTCCGTATATTAAACCATTCCTGCATCCCTG
GGATGAAGCCTACTTGGTCATGATGGATGATCATTTTGATGTGTTCTTGG
ATTTGGTTTGCGAGGATTTTATTGAGTATTCATAAGGGAAATTGGTCTGA
AGTACTCTTTCTTTGTTGCATCTTTGTGTGGTTTAGGTATCAGAGTAATT
GTGGCTTCCTAGAATGAACTGGGTAAAGTACCTTCTGTTTCTATTTTGCG
GAACAGTTTGAGGAGAGTTGGAATTAGGTCTTCTTTGAAAGTCTGATAGA
ACTCTGGACTAACCCCCTTTGGTCTTGCATTCTTTTTGGCTCGTACACCA
TTGCTGATCGCTTCCATATCCCCAACTCCCCTTGTGACCGCCTCGACCTT
CTCCCGTCTCTGGTTTCTCTTTTGCCTACCTCTTCTCTCTCTCCTCTGCT
GGCCCTCCTTATCCATCCTCTTCTCTTCTTTATTTTTTCTCTCCCTCTGT
CTCCCTTTCTTCTTTTTTGCCTAATTCCTGACCCCCCCGCCCTTTCCCCC
TTCGGTCCGTCTTCTTCTATATGTCTTTTTTTCCCTTTCTCCTTCTGTTT
TCTGTTGTCCTCTTTTGGTTATCTCTTTTGGTTATCTTCCTTCGTCTACT
TAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATTATTCATAAACTGGCTCAGGAATGGAGACCTTAGTGAACT
TATTGATTTAGGTAATTATTATTGGTCTCAGTAAAGATCTAAAAACCCTA
AAATATAAACACAACAAACATGATGAGGCTGTGTTGTGTGACTGTGATAG
CAGACTAGGCTGACAGTCAGTAAATTAGATGAGGTTGTGCCAGGAATGGC
TTGTGCCCAGGAGATGTATTTGAACCAGAATTGCATCACATAAGACAGGA
TCACTGATGTTTGGAGGCATCATCAGGCTGAAAGTACAGTTATATTGATT
GGATCTGCAATATCAGAGGCGGAGGAAGAGACTAAGTGGTCTCCTGGAGA
ATTATACCAATGTGGGGCTTCTGAAGAACTGGAGACATGTCTAGGCTGAG
AAGAGCAGTACTCAATGTCCAAGTTTAGAACACAACACTGCCAGTTAGGT
CTCTTTCTTCTCGTATCCTCTTCCTCAGNTACAGCTCCTTAGGAGTAAGT
CCTCTCAATAGAGAAAAGGAAGGAAGCAGACTTATGGTGCGGGGAAAAAG
ATCAAAACAGAAGTTCTTTTTCTCTCACGGGTTGAACCCCAAACCATGAT
TATTGACCAATTGAACCCTCCCGGCAATGAAAAATTTTTGCTTTAAAATC
TTTTGGTAAAAATCTACCTCGTTTAAAAAAAAAATTTGTCCACCCATATA
ATATTCTTTTTCCCCTTTCATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_g23.g1 MSMg01no423_g23.g1 CHROMAT_FILE:
MSMg01no423_g23.g1 PHD_FILE: MSMg01no423_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:07 2005
         (413 letters)



>mm_chr13_116101471_116102283
          Length = 813

 Score =  775 bits (401), Expect = 0.0
 Identities = 410/413 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attattcataaactggctcaggaatggagaccttagtgaacttattgatttaggtaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attattcataaactggctcaggaatggagaccttagtgaacttattgatttaggtaatta 260

                                                                       
Query: 61  ttattggtctcagtaaagatctaaaaaccctaaaatataaacacaacaaacatgatgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattggtctcagtaaagatctaaaaaccctaaaatataaacacaacaaacatgatgagg 320

                                                                       
Query: 121 ctgtgttgtgtgactgtgatagcagactaggctgacagtcagtaaattagatgaggttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgttgtgtgactgtgatagcagactaggctgacagtcagtaaattagatgaggttgt 380

                                                                       
Query: 181 gccaggaatggcttgtgcccaggagatgtatttgaaccagaattgcatcacataagacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaggaatggcttgtgcccaggagatgtatttgaaccagaattgcatcacataagacag 440

                                                                       
Query: 241 gatcactgatgtttggaggcatcatcaggctgaaagtacagttatattgattggatctgc 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ggtcactgatgtttggaggcatcatcaggctgaaagtacagttatattgattggatccgc 500

                                                                       
Query: 301 aatatcagaggcggaggaagagactaagtggtctcctggagaattataccaatgtggggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatcagaggcggaggaagagactaagtggtctcctggagaattataccaatgtggggc 560

                                                                
Query: 361 ttctgaagaactggagacatgtctaggctgagaagagcagtactcaatgtcca 413
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ttctgaagaactggagacatgtctaggctaagaagagcagtactcaatgtcca 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)