BAC Information

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BAC

Clone NameMSMg01-424L18
Chromosome13 (Build37)
Map Location 114,282,307 - 114,282,832
singlet/doubletsinglet
Overlap genenone
Upstream geneIl6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888
Downstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424L18.T7 (MSMg01no424_l18.b1)MSMg01-424L18.TJ (MSMg01no424_l18.g1)
ACCAG518584AG518585
length739761
length of high quality
(start - end)
267 (47 - 313)537 (74 - 610)
definitionCHROMAT_FILE: MSMg01no424_l18.b1 PHD_FILE: MSMg01no424_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:46 2005CHROMAT_FILE: MSMg01no424_l18.g1 PHD_FILE: MSMg01no424_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCCCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATATTGGATATTAGTC
CCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC
CTTTTTGTCTTATTGATGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTT
TATGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTG
TTCTATTCAGGAATTTTTTCCCTGTACCCATATCTTCGAGGCTTTTCCCT
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTT
AATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTC
GCATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTTATAGATCAA
GTGACCATAGGTGTGTGGGTTCATCTCTGGGCCTTCAATTCTGTTCCATT
GGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCTTAATT
GCTCTGCATTACAGTTTTTAGGCCGGTACTGATGTTTTCTCTCATATGTT
TTTTTACTCCTGAGAAAAGATTTTTGCTCCCCCCTCTTN
GAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCACCTTACTATTCTGCTTATTGCTGT
AGGCCACAGGCTTTTTATTTTAACCAATCGGAAGGTGATAGAGAATATTG
TCCAGAAAGTACTAAGGCAGGAGATGGTTACCTAAATCTGACCTGCAGTC
AGGTCTGAAACCAACATTTGTATAATACAAGGATAATCTTTATACAATGC
ACAAAAACATTACTCCAACAGTAAGTAGCAATTATATGCTTTAATTTTTA
TTGGTCTATATTGCCATTACATATTTATATGTAATGCATACAACAATACA
TGTGTTGTACCCATTTCTGTTAGTTTTTGAATTTAGTTATTTCTAATTCT
TCTGTACACTTTGATCTTACAGCCTTTTCTTTTGCTCCAGCCTGTAGTGG
CAACAACTGCTCATAGCTCCAGGATTCCCACTGGGACTCTGGCATTACAT
GGCTAGAACCATCCAAGTTCTGGACAAGAAAATGGAAGACAGAACACACA
TGCTAGTCGGTTAGAAACTGCCATAAGATATTCTGTCCACATTTCAGTGC
TAACCATTTGGTCAACTGGCCAAATGTAATTGTAAAGTTGAGACATGATC
TCCATAGCTAAATGTCTGTCTTAATTGAGACTTCCTTGCTGTGAACAGAC
ATCTTGGCCCAGGCAACTCTTACAAAAGGACAACCTTTATTTGTGGTTGT
CTTACAGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_l18.g1 MSMg01no424_l18.g1 CHROMAT_FILE:
MSMg01no424_l18.g1 PHD_FILE: MSMg01no424_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:46 2005
         (537 letters)



>mm_chr13_114282110_114283046
          Length = 937

 Score =  835 bits (432), Expect = 0.0
 Identities = 500/534 (93%), Gaps = 19/534 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccttactattctgcttattgctgtaggccacaggctttttattttaaccaatcggaa 60
           ||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 198 ccaccgtactattctgcgtattgctgtaggtcataggctttttattttaaccaatcggaa 257

                                                                       
Query: 61  ggtgatagagaatattgtccagaaagtactaaggcaggagatggttacctaaatctgacc 120
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||      
Sbjct: 258 ggtgacagagaatattgtccagaaaatactaaggcaggagatggttacctaaat------ 311

                                                                       
Query: 121 tgcagtcaggtct-----------gaaaccaacatttgtataatacaaggataatcttta 169
             |||||||||||           |||||||||||||| |||||||||||||||||||||
Sbjct: 312 --cagtcaggtctctgctggttcagaaaccaacatttgaataatacaaggataatcttta 369

                                                                       
Query: 170 tacaatgcacaaaaacattactccaacagtaagtagcaattatatgctttaatttttatt 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tacaatgcacaaaaacattactccaacagtaagtagcaattatatgctttaatttttatt 429

                                                                       
Query: 230 ggtctatattgccattacatatttatatgtaatgcatacaacaatacatgtgttgtaccc 289
           |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |
Sbjct: 430 ggtctatattgccattacataaatatatgtaatgcatacaacaatacatgtgttgtactc 489

                                                                       
Query: 290 atttctgttagtttttgaatttagttatttctaattcttctgtacactttgatcttacag 349
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atttctgctagttttcgaatttagttatttctaattcttctgtacactttgatcttacag 549

                                                                       
Query: 350 ccttttcttttgctccagcctgtagtggcaacaactgctcatagctccaggattcccact 409
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccttttcttttgctccaggctgtagtggcaacaactgctcatagctccaggattcccact 609

                                                                       
Query: 410 gggactctggcattacatggctagaaccatccaagttctggacaagaaaatggaagacag 469
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 610 gggactctggcattacatggctagaaccatccaagttctggacaagagaatggaagacag 669

                                                                 
Query: 470 aacacacatgctagtcggttagaaactgccataagatattctgtccacatttca 523
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 670 aacacacatgctagtcggttagaaactgccataagatattctgttcacatttca 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)