BAC Information

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BAC

Clone NameMSMg01-424M13
Chromosome13 (Build37)
Map Location 39,035,692 - 39,035,940
singlet/doubletsinglet
Overlap geneSlc35b3
Upstream geneRreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102
Downstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424M13.T7 (MSMg01no424_m13.b1)MSMg01-424M13.TJ (MSMg01no424_m13.g1)
ACCAG518622AG518623
length744749
length of high quality
(start - end)
601 (44 - 644)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no424_m13.b1 PHD_FILE: MSMg01no424_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:49 2005CHROMAT_FILE: MSMg01no424_m13.g1 PHD_FILE: MSMg01no424_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTACCTTCTTCTCCAGCACCATGTTTTCCTGCACACTGCCATGCTTC
TTGTCATGATGACAATGGACTAAAACTCTGACACTGTAAGCCAGCCCCAG
TTAAATGTTTTCCTTTATAAATGTTGCCTTAGTCATGTTGTCTCCTCACA
GCAATAAAACCCTAAGAAGACAATACCATTGTAGATAAAGGATTTGTGGA
TGACTTGGTGTTTGCATATCTCTTTCGATAGTGTGCAGAGTACCTTCCTA
TACCAGAGACCCTGGTTATGGGTGAAGGCTCTATGTAGGCACCAATACAA
CGTCTCCATCGTCAATGAGTTGTGTAGGTGTCATCTTCAGCAATAGAAGC
CTCACTGTCAGTTTGTGGAGAGCAACCTATAGTCTTGGCAACAGCTGGGT
TGCTTAGGAATTTTGGAATCTCTTCGCCGAACAACTTGACTAGTTGCAAC
CCAAACCCTGGGAATGGAAGCTCTGTTTAGTGACAAGAGATGTCCAGTTG
GGACTCTGCCATCCACATTATCTGGTGATTTTGTTTTGACTGCCTTCATA
GATGTATATTTTAGGAAGTTCCTACTGCATTAACCTTACAACTAACCCCT
CAAATGCCTTTCAGTTTTAGCTGTTGCTCACCATATCCTCCCACATCCCT
TCCTCTACCCCATCCTCACATGACTATCCTATTCCAGCTTCTCA
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGTGGCGAATTCACTCATTTTCCTTTGCCTCTATTTACA
AAGTGACATGTATTCTAACCTTTGGTAAAGATTCTAAGGTAATGTATGTG
CCTAGTCAGAAGTTTTAGTAGAGACTGAGGTATTTGTTCCATATGAACAA
ACCACTATCTTTAATGTCCAGGGAGGTGGCTGGTACATTTCCACTGTAAA
AGGTGGTCTCTGGGAAGGCATCTTGATGCACAAACTGAGAGCAGGCTGCC
TAAGCCCTTCAGTGATGGGAACAGTGTCAAGACAGGGACAGGCAACAACT
TGGCCCAACGCTTGCTGCTCTAACTGCCTCCTCTTTCTCTCCAGCTTGAC
CCAGATGGGTTCTAAGTCATCAGAGAGCTGGTACAGTCAGTCAGGGAAGA
AGGGGGTCCACTCAGACAAGCCTCACTATGCAAATACAGCACGGTGGGGA
TGCATTAAATTCCAAGATAANATAAAACAAAATGCTGGCTATTCTCTCTT
ACATCCAAATTATGAACCTCCAATCAATATTTAGAGAAATATCAATGTTT
TTAATACCTTATTTTTACCAGATACGGTACTATTACAATATCTAGAATGC
TCAAGAACTCAGTTGTGGACATTTGATTGTTTTTCCTAATGCCAGATGCC
ACAACATAGTTGTGTGCTTCAAACAGTATAAAAGCAGTATTACTGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_m13.g1 MSMg01no424_m13.g1 CHROMAT_FILE:
MSMg01no424_m13.g1 PHD_FILE: MSMg01no424_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:49 2005
         (249 letters)



>mm_chr13_39035492_39036140
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcattttcctttgcctctatttacaaagtgacatgtattctaacctttggtaaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcattttcctttgcctctatttacaaagtgacatgtattctaacctttggtaaagat 260

                                                                       
Query: 61  tctaaggtaatgtatgtgcctagtcagaagttttagtagagactgaggtatttgttccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaggtaatgtatgtgcctagtcagaagttttagtagagactgaggtatttgttccat 320

                                                                       
Query: 121 atgaacaaaccactatctttaatgtccagggaggtggctggtacatttccactgtaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaacaaaccactatctttaatgtccagggaggtggctggtacatttccactgtaaaag 380

                                                                       
Query: 181 gtggtctctgggaaggcatcttgatgcacaaactgagagcaggctgcctaagcccttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtctctgggaaggcatcttgatgcacaaactgagagcaggctgcctaagcccttcag 440

                    
Query: 241 tgatgggaa 249
           |||||||||
Sbjct: 441 tgatgggaa 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)