Query= MSMg01no424_p18.b1 MSMg01no424_p18.b1 CHROMAT_FILE:
MSMg01no424_p18.b1 PHD_FILE: MSMg01no424_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:04 2005
(508 letters)
>mm_chr13_42427074_42427981
Length = 908
Score = 915 bits (473), Expect = 0.0
Identities = 497/505 (98%)
Strand = Plus / Plus
Query: 1 gcaatttaccacagttgaagagtgcatggtttgcttgtctgttgctgtggtgaaacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaatttaccacagttgaagagtgcatggtttgcttgtctgttgctgtggtgaaacacca 260
Query: 61 tggccaaaagaaccttagagaagaaagagtttattctggcttatagtttcaaagacagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggccaaaagaaccttagagaagaaagagtttattctggcttatagtttcaaagacagat 320
Query: 121 tccataatggctgggaaggcatagcatggtagcaagtacaggaagttaactgttttttac 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tccataatggctgggaaggcatagcacggtagcaagtacaggaagttaactgttttttac 380
Query: 181 ctaagcataggaagaaggggtcaaagagggagaaggagagagcacaggagtaattcacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaagcataggaagaaggggtcaaagagggagaaggagagagcacaggagtaattcacct 440
Query: 241 tccagctccttgtccttctcattcatttctttgtatttgagatccttctaactcttctcc 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagctccaggtccttctcattcatttctttgtatttgagatccttctaactcttctcc 500
Query: 301 tagttcttcataaaataagtaatggtttgaaacagagaacttttttgttgttgtttttac 360
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tagttcttcataaaataagcaatggtttgaaacagagaacttttttgttgttgttttttc 560
Query: 361 ttatcacttaatagcaattggtgggtacttagcatgtaataggtgacaattttgaaatat 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 561 ttatcacttaatagcaattggtgggtacttagcatgtaataggtgacgatttttatatat 620
Query: 421 ggtaagaattatcaacgtatattaattctacacaatagtgagtttttgtgacccattgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtaagaattatcaacgtatattaattctacacaatagtgagtttttgtgacccattgta 680
Query: 481 ctggctagttttgtgtcaacttgac 505
|||||||||||||||||||||||||
Sbjct: 681 ctggctagttttgtgtcaacttgac 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_p18.g1 MSMg01no424_p18.g1 CHROMAT_FILE:
MSMg01no424_p18.g1 PHD_FILE: MSMg01no424_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:04 2005
(268 letters)
>mm_chr13_42565912_42566579
Length = 668
Score = 389 bits (201), Expect = e-112
Identities = 242/257 (94%), Gaps = 5/257 (1%)
Strand = Plus / Minus
Query: 9 tttagttcacaaggtgttgctngg-aaatcagtgccgtgcactaacatatacacagagct 67
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 428 tttagctcacaaggtgttgct-ggaaaatcagtgccgtgcactaacatatacacagagct 370
Query: 68 cgaccaataaattcactgaatgagaagttgactccaattgaaacccaccacgtggcatgt 127
| ||||||||| ||||||||||||||||||| |||||| ||||| ||||| |||||||||
Sbjct: 369 caaccaataaactcactgaatgagaagttgaatccaatggaaacacaccatgtggcatgt 310
Query: 128 tcaaatcaatattcatcccaagatgaattccactgggaatcgggggacaaatgacccaca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcaaatcaatattcatcccaagatgaattccactgggaatcgggggacaaatgacccaca 250
Query: 188 aaatattctttgtctgctgtgccttctgtttatacatgaagtgttgttgttgttgttgtt 247
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 acgtattctttgtctgctgtgccttctgtttatacatgaag---tgttgttgttgttgtt 193
Query: 248 tgtgtttttggttgttg 264
|| ||||||||||||||
Sbjct: 192 tgggtttttggttgttg 176
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
